GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000353-TA|BGIBMGA000353-PA|IPR000757|Glycoside
hydrolase, family 16, IPR008985|Concanavalin A-like lectin/glucanase
         (375 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    31   1.3  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    31   1.3  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    31   1.3  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    31   1.3  
Z92781-3|CAB07182.1|  326|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U37429-5|AAA79347.1|  311|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical
           protein F15H10.7 protein.
          Length = 666

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 132 NILNPIKSARIRTVHSFSFQYGKVEVRAKMPSGDWLWPAIWLMPAYN-KYGTWPASGEID 190
           ++L  +KS     + SFS QY  V VRAK PS   L   +     +N K  TW + GE++
Sbjct: 578 SVLKDVKSEDT-PLQSFSLQY-HVVVRAKAPSNALLESTL----EHNLKTNTWSSLGEVE 631

Query: 191 LVESRGNKNMFLN 203
                GN +  +N
Sbjct: 632 RNNKYGNTSFCVN 644


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 329  KPWWNNSPMAATDFWNGQGGWLPT-WNLNVNDGQDASLQVDYV 370
            K W+ +S  + TDF  G   WLP   +L++ +  D  L VD+V
Sbjct: 3438 KLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 329  KPWWNNSPMAATDFWNGQGGWLPT-WNLNVNDGQDASLQVDYV 370
            K W+ +S  + TDF  G   WLP   +L++ +  D  L VD+V
Sbjct: 3438 KLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 329  KPWWNNSPMAATDFWNGQGGWLPT-WNLNVNDGQDASLQVDYV 370
            K W+ +S  + TDF  G   WLP   +L++ +  D  L VD+V
Sbjct: 3438 KLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 329  KPWWNNSPMAATDFWNGQGGWLPT-WNLNVNDGQDASLQVDYV 370
            K W+ +S  + TDF  G   WLP   +L++ +  D  L VD+V
Sbjct: 3438 KLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWV 3480


>Z92781-3|CAB07182.1|  326|Caenorhabditis elegans Hypothetical
           protein F09C3.4 protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 84  LYIRPSLTSDQFGSAFLHSGRLNIE--GGAPADRCTNPQWYGCERVGTPTNILNPIKSAR 141
           +Y  P     Q  S  L S R+ +     AP   CT+  W G + V +   IL PIKS  
Sbjct: 110 IYESPQSLMFQDLSILLKSPRIRLSWLDLAPIS-CTSYNWTGVD-VNSIVKILEPIKSRH 167

Query: 142 IRTVHSFSFQYGKV 155
           I  V+     Y +V
Sbjct: 168 IERVYFQDINYAEV 181


>U37429-5|AAA79347.1|  311|Caenorhabditis elegans Hypothetical
           protein F09E5.7 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 324 KNPIPKPWWNNSPMAATDFWNGQGGWLP 351
           ++P+  P+ N  P   T+++N  GG+LP
Sbjct: 221 RHPVHDPYGNRFPDPDTEYYNPLGGFLP 248


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.139    0.474 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,537,155
Number of Sequences: 27539
Number of extensions: 498101
Number of successful extensions: 807
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 7
length of query: 375
length of database: 12,573,161
effective HSP length: 83
effective length of query: 292
effective length of database: 10,287,424
effective search space: 3003927808
effective search space used: 3003927808
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)