GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000352-TA|BGIBMGA000352-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    33   0.11 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    30   0.58 
SPAC3H5.04 |aar2||U5 snRNP-associated protein Aar2|Schizosacchar...    27   4.1  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    27   7.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   7.1  

>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 15/133 (11%)

Query: 4   SGLDTDFHNWDV-PFPAVTICDASPVDDELLQEYIESVWGSDPPERAAEMLQWLATLSYS 62
           S L  + + W   P   +   D  PV  + L+     +  ++PP++     ++L +   +
Sbjct: 192 SRLTVNIYRWTGDPLKDLLFKDLRPVQTKELESLFAEL-PTEPPKQT----RFLKSQQPT 246

Query: 63  SIAEHAAEYLAEPGLVGENENNVPEPARDSKEAVFK------VVRHCETLFYDCVWKGDS 116
           S      +   +P L  ENE + PEP+ D  + V +      V  + ETL     WK D 
Sbjct: 247 SEPNVETQVEEQPAL--ENEESEPEPSDDQFDLVEEVDVLPNVDPNLETLMASSKWK-DR 303

Query: 117 EECCDLLIPVFTE 129
           +E  D L+PV ++
Sbjct: 304 KEALDKLLPVLSQ 316


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 30.3 bits (65), Expect = 0.58
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 406 PKPPHNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYSPPPGYTTYLP 453
           P PP + S    W + P+ G +   + RA  SM P  SP PG ++  P
Sbjct: 850 PLPPPSTSTTAGWNDAPMLGQLP--MRRAAPSMAPVRSPFPGASSAQP 895


>SPAC3H5.04 |aar2||U5 snRNP-associated protein
           Aar2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 32  LLQEYIESVWGSDPPERAAEMLQWLATLSYSSIAEHAA 69
           L Q  ++SVW  +P    AE+   ++ LSYS ++ + A
Sbjct: 178 LFQRLVQSVWNDNPISALAELS--ISFLSYSILSHYGA 213


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 404 AQPKPPHNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYSPPPGYTTY 451
           AQP PP      P    PP   S  P +   + + PPQ +P P    Y
Sbjct: 204 AQPPPPP-----PQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQAY 246


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/50 (20%), Positives = 26/50 (52%)

Query: 182  DIYIHSTEEMAGLEQSAQHSWDYRVEKVSFSVKHTYTTDDARQLSIRQRR 231
            D+++     +AGL+++   ++   +E   F +  T +T D+ ++   Q +
Sbjct: 1231 DVHVKVNAVLAGLQKNDPSAYSNMLEATHFELSTTSSTSDSNEIEKTQEK 1280


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,332
Number of Sequences: 5004
Number of extensions: 87070
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 5
length of query: 453
length of database: 2,362,478
effective HSP length: 75
effective length of query: 378
effective length of database: 1,987,178
effective search space: 751153284
effective search space used: 751153284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)