Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000352-TA|BGIBMGA000352-PA|IPR001873|Na+ channel,
amiloride-sensitive
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 32 0.82
01_06_0667 - 31048987-31049134,31049630-31049865,31050720-310509... 31 1.4
12_02_1174 - 26696869-26698191 31 1.9
07_03_0600 + 19866757-19867218,19867920-19868429 31 1.9
02_02_0240 + 8196140-8198248,8198381-8198650 31 1.9
07_01_0632 + 4729426-4731300 31 2.5
06_03_1191 + 28286685-28287008,28287149-28287211,28287377-282874... 30 4.4
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 29 5.8
02_05_0658 + 30676990-30677388 29 5.8
11_06_0610 - 25449085-25453284 29 7.7
06_01_0486 - 3455030-3455770 29 7.7
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 7.7
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 32.3 bits (70), Expect = 0.82
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 397 RERAERLAQPKPPHNLSLIPWWKE--PPIPGSVRPILVRAKDSMPPQ-YSPPP 446
++ +R P PP N++ P+ ++ PP P S P+ + S+PP SPPP
Sbjct: 958 QQSEKRPPPPPPPPNVAPPPFTRQDIPPPPPSPPPLPITQPPSVPPPPNSPPP 1010
>01_06_0667 -
31048987-31049134,31049630-31049865,31050720-31050926,
31051005-31051197,31051282-31051652
Length = 384
Score = 31.5 bits (68), Expect = 1.4
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 41 WGSDPPERAAEMLQWLATLSYSSIAEHAAEYLAEPGLVGENENNVPEPARDSKEAVFKVV 100
WG + + L T S +S A +A +LA + +N + VP+P K+AV V
Sbjct: 150 WGDTADSPSGRAGRPLGTYSSASFAVNAQYFLAR-NITFKNTSPVPKPGASGKQAVALRV 208
Query: 101 RHCETLFYDCVWKGDSEECCD 121
F C + G + D
Sbjct: 209 SADNAAFVGCRFLGAQDTLYD 229
>12_02_1174 - 26696869-26698191
Length = 440
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 403 LAQPKPPHNLSLIPWWKEPPIPG---SVRPILVRAKDSMPPQYSPP 445
+ QPKP SL P PP P SV+P +V+ K PP PP
Sbjct: 174 VVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPP 219
Score = 30.3 bits (65), Expect = 3.3
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 405 QPKPPHNLSLIPWWKEPPIPG---SVRPILVRAKDSMPPQYSPP 445
+P+PP +L P PP P SV+P +V+ K PP PP
Sbjct: 145 KPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPP 188
>07_03_0600 + 19866757-19867218,19867920-19868429
Length = 323
Score = 31.1 bits (67), Expect = 1.9
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 405 QPKPPHNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYSPPPGYTTYLP 453
QP PPH P PP P + PPQY+PPP LP
Sbjct: 47 QPLPPHYYQAGPPHAPPP---QQPPAMWGQPPPPPPQYAPPPPQQFQLP 92
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 31.1 bits (67), Expect = 1.9
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 409 PHNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYS----PPPGYTTYLP 453
PH + + PPIPG +P ++R SM P + PPPG Y+P
Sbjct: 585 PHMMPTMHPPPPPPIPG--QPQVIRMPGSMGPMPTNIPPPPPGQNPYMP 631
>07_01_0632 + 4729426-4731300
Length = 624
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 386 CAAVRDADQLRRERAERLAQPKPPHNLSLIPWWKE---PPIPGSVRP 429
C ++ ++ RER E A PPH ++++ KE P P S P
Sbjct: 290 CVVIKQEFKIHRERLELAAAAPPPHTITVLEMSKETERSPRPSSPAP 336
>06_03_1191 +
28286685-28287008,28287149-28287211,28287377-28287461,
28287561-28287623,28287954-28288029,28288190-28288223,
28289553-28289659,28289738-28289807,28289852-28289950
Length = 306
Score = 29.9 bits (64), Expect = 4.4
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 406 PKPPHNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYSPPPGY 448
P PPH+ P PP PG+ R + PP PPP Y
Sbjct: 9 PPPPHSSYAAPPPPPPPPPGTSLYASYR-HHAYPPHPPPPPAY 50
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 29.5 bits (63), Expect = 5.8
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 402 RLAQPKPPHNLSLIPWWKEPPIPGSVR---PILVRAKDSMPPQ---YSPPPGYTTYLP 453
+ A PPH S P IP S P V PP Y+PPP Y Y P
Sbjct: 21 QFAPNPPPHPASSAADAAPPTIPASYASAPPYSVGGYSDQPPSAPSYAPPPQYAGYAP 78
>02_05_0658 + 30676990-30677388
Length = 132
Score = 29.5 bits (63), Expect = 5.8
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 53 LQWLATLSYSSIAEHAAEYLAE-PGLVGENENNVPEPARDSKEAVFKVVRHCETLFYDCV 111
L+W+ L Y++ AE L PGL G + R + + + VV C L D
Sbjct: 3 LEWVV-LGYAAGAEAIMLLLLTLPGLDGLRRGMI-SVVRSALKPMMSVVPFCLFLLMDIY 60
Query: 112 WKGDSEECCD 121
WK ++ CD
Sbjct: 61 WKYETRPTCD 70
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 7.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 401 ERLAQPKPP-HNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYSPPPGYT 449
E+ + P P H S P K PP P + P + + S PP+ PP +T
Sbjct: 853 EKSSSPPPEAHVSSPPPPEKSPPPPETKSPPTLTPEISPPPEGKSPPSHT 902
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.1 bits (62), Expect = 7.7
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 408 PPHNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYSPPP 446
PP+ P + PP P S P + PP Y PPP
Sbjct: 113 PPYIPPPTPPYVPPPTPPSPPPYVPPPTPPSPPPYVPPP 151
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 406 PKPPHNLSLIPWWKEPPIPGSVRPILVRAKDSMPP----QYSPPPGYTTYLP 453
P PP + + +PW + PP P + + PP Q +PPP Y P
Sbjct: 425 PPPPGSYAPVPWGQPPPYASYPPPPPGSSMYNPPPPAPGQATPPPYGVQYAP 476
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.134 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,023,081
Number of Sequences: 37544
Number of extensions: 585216
Number of successful extensions: 1512
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1483
Number of HSP's gapped (non-prelim): 37
length of query: 453
length of database: 14,793,348
effective HSP length: 84
effective length of query: 369
effective length of database: 11,639,652
effective search space: 4295031588
effective search space used: 4295031588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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