GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000352-TA|BGIBMGA000352-PA|IPR001873|Na+ channel,
amiloride-sensitive
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48396| Best HMM Match : ASC (HMM E-Value=0)                         30   3.4  
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)                     30   4.4  
SB_11096| Best HMM Match : Fz (HMM E-Value=0.00044)                    30   4.4  
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)              29   5.9  
SB_18941| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)                  29   7.8  

>SB_48396| Best HMM Match : ASC (HMM E-Value=0)
          Length = 511

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 78  VGENENNVPEPARDSKEAVFKVVRH-CETLFYDCVWKGDSEECCDLLIPVFT--EMGFCY 134
           +GE+ N   E  R + +A+ +   H  E + Y+C +  D  +C +  I VFT  + G CY
Sbjct: 142 IGEDMNVTSE--RINMDAIVQKSGHQLEKMVYECRFVRD--KCDNKSIKVFTSEKRGLCY 197

Query: 135 AFNS 138
            FNS
Sbjct: 198 TFNS 201


>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
          Length = 662

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 405 QPKPPHNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYSPPPGYTTYLP 453
           Q  PP N+S+ P  +   +P  + P+ +      PP   PPPG    LP
Sbjct: 344 QVGPPGNMSM-PNHRPQGLPPGMPPMALSLPGMPPPGLLPPPGMPPRLP 391


>SB_11096| Best HMM Match : Fz (HMM E-Value=0.00044)
          Length = 918

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 181 FDIYIHSTEEMAGLEQSAQHSWDYRVEKVSFSVKHTYTTDDARQL 225
           F  Y   T+ +    ++ Q +  Y + +VSF+ K TYT  D+R +
Sbjct: 312 FRAYTSVTQSIRPWYENPQAALTYSITQVSFTDKRTYTVMDSRSI 356


>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 795

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 403 LAQPKPPHNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYSPPPGYTTYLP 453
           L  P PP  +SL P  + PP      P +  +  S PP+ S PP  ++  P
Sbjct: 721 LPLPPPPEEVSLPPPDESPP-SSKHPPTVSPSSSSAPPRPSTPPSVSSAPP 770


>SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)
          Length = 576

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 182 DIYI-HSTEEMAGLEQSAQHSWDYRVEKVSFSVKHTYTTDDARQLSIRQRRCVFADELHL 240
           ++YI H T    G +   +H   +R+  ++FS+ +     D ++L    R   F+ EL  
Sbjct: 351 EVYIYHDTPH--GYKNPERHVVSFRISDIAFSIDNELIVVDNKRLVFYNRDHSFSQELLA 408

Query: 241 DTSNIYTYS 249
           D    Y  S
Sbjct: 409 DDEEFYFVS 417


>SB_18941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 170 FMFNSDRKNTTFDIYIHSTEEMAGLEQSAQHSW--DYRVEKVSFSVKHTYTTDDARQLSI 227
           FMF     N   D   H+ ++   LE S  H+W    R   V F  ++ + T  +  +++
Sbjct: 327 FMFEDVSLNKVADALAHTRQQFKSLETSTNHAWIVSSRDTHVLFPFEYDFATSRSELVNV 386


>SB_27977| Best HMM Match : ARID (HMM E-Value=1.6e-26)
          Length = 1536

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 406 PKPPHNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYSPPPGY 448
           P PP+  S  P  +    P   RP +V+++  +P Q SP P Y
Sbjct: 695 PMPPYRPSS-PHVQSSASPSMQRPQMVQSQGVLPQQLSPKPKY 736


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,031,605
Number of Sequences: 59808
Number of extensions: 642855
Number of successful extensions: 1532
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1526
Number of HSP's gapped (non-prelim): 11
length of query: 453
length of database: 16,821,457
effective HSP length: 84
effective length of query: 369
effective length of database: 11,797,585
effective search space: 4353308865
effective search space used: 4353308865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)