Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000352-TA|BGIBMGA000352-PA|IPR001873|Na+ channel,
amiloride-sensitive
(453 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000198-9|AAB53057.4| 684|Caenorhabditis elegans Hypothetical ... 47 2e-05
U88310-3|AAB42337.1| 608|Caenorhabditis elegans Hypothetical pr... 42 9e-04
Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical pr... 40 0.005
U64851-2|AAC47987.1| 613|Caenorhabditis elegans Hypothetical pr... 37 0.025
U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory ... 36 0.059
L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degeneri... 36 0.059
Z98877-13|CAB63410.2| 254|Caenorhabditis elegans Hypothetical p... 36 0.078
Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical pr... 36 0.078
AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein. 36 0.078
Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical pr... 35 0.10
U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical pr... 34 0.18
U88310-1|AAB42340.1| 663|Caenorhabditis elegans Hypothetical pr... 34 0.18
U58750-12|AAB00652.2| 266|Caenorhabditis elegans Hypothetical p... 33 0.55
Z81015-3|CAB02660.1| 411|Caenorhabditis elegans Hypothetical pr... 32 0.72
U97404-2|AAB93309.1| 795|Caenorhabditis elegans Acid-sensing/am... 31 1.7
Z69360-5|CAC42291.2| 732|Caenorhabditis elegans Hypothetical pr... 30 3.9
Z69360-4|CAA93286.2| 369|Caenorhabditis elegans Hypothetical pr... 30 3.9
Z69360-3|CAA93285.2| 780|Caenorhabditis elegans Hypothetical pr... 30 3.9
X53314-1|CAA37396.1| 294|Caenorhabditis elegans deg-1 product p... 29 5.1
U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of... 29 5.1
L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein. 29 5.1
AL117195-11|CAB55017.1| 228|Caenorhabditis elegans Hypothetical... 29 5.1
Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical pr... 29 6.7
U97592-2|AAB52870.1| 462|Caenorhabditis elegans Temporarily ass... 29 6.7
U97592-1|AAB52871.3| 638|Caenorhabditis elegans Temporarily ass... 29 6.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 8.9
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 8.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 8.9
>AF000198-9|AAB53057.4| 684|Caenorhabditis elegans Hypothetical
protein T28F2.7 protein.
Length = 684
Score = 47.2 bits (107), Expect = 2e-05
Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 19/190 (10%)
Query: 103 CETLFYDCVWKGDSEECCDLLIPVFTEMGFCYAFNSRHAEKIW-PWQSQ---AQQEQFI- 157
C +F C + G +CC P+F+++G C+ N + ++K W Q++ A Q I
Sbjct: 231 CGDMFKMCSFGGRRFDCCKYATPIFSDLGKCFTLNLQGSDKSWMKMQTEPGIAAGLQIIL 290
Query: 158 -----EAFIHETDAKWSFMFNSDRKNTTFDIYIHSTEEMAGL-EQSAQHSWDYRVEKVSF 211
E F ETD + +F+S +N F YIHS+EE+ L + S D V
Sbjct: 291 DSHLEEQFDSETDGV-TPVFSSAFEN-GFRFYIHSSEEIPFLASEGIAVSPDSVVYSALS 348
Query: 212 SVKHTYTTDDARQLSIRQRRCVFADELHLDTSNIYTYSAXXXXXXXXXXXXFCKCVPHFY 271
S K+ + +A C + D S YT + C C P Y
Sbjct: 349 SSKYILLSSNA------WGNCSDSWPRGYDYSFPYTSAMCSTMCKAQYFQNLCGCSPSIY 402
Query: 272 PTIKGYKQCT 281
+ + CT
Sbjct: 403 NHLNRFNDCT 412
>U88310-3|AAB42337.1| 608|Caenorhabditis elegans Hypothetical
protein C24G7.1 protein.
Length = 608
Score = 41.9 bits (94), Expect = 9e-04
Identities = 57/283 (20%), Positives = 102/283 (36%), Gaps = 13/283 (4%)
Query: 15 VPFPAVTICDASPVDDELLQEYIESVWGSDPPERAAEMLQWLATLSYSSIAEHAAEYLAE 74
+ FP +TIC+ +P+ + E ++ G P ++ W + I + L E
Sbjct: 131 IQFPQITICNFTPIRKTFVNEMNKT--GQISPNMINYIMHWFTEVPIL-IGSSNWQLLHE 187
Query: 75 PGLVGENENNVPEPARDSKEAVFKVVRHCETLFYDCVWKGDSEECCDLLIPVFTEMGFCY 134
G E P + C +F C ++G++ +CC + PV T +G CY
Sbjct: 188 -GNKDLQEYQKNNPNFTVQGFFIDAGFSCSDIFKLCSFQGETFDCCSISTPVLTPLGKCY 246
Query: 135 AFNSRHAEKIWPWQSQAQQEQFIEAFIHET-DAKWSFMFN-SDRKNTTF-DIYIHSTEEM 191
+ + K P Q E I+A + T DA F+ S+ + F + +++ +
Sbjct: 247 TLDLLSSTK--P-SMHKQTEPGIQAGLAITLDAHLEEQFDGSNGMDALFTNSFVNGFQYF 303
Query: 192 AGLEQSAQHSWDYRVEKVSFSVKHTYTTDDARQL--SIRQRRCVFADELHLDTSNIYTYS 249
+ H SV +T + + +L + + C + + Y
Sbjct: 304 VHPPNTIPHLSSDEFTVTPNSVAYTAISSERFELLPTNKWGNCTEHYPSGIKSDLPYLTG 363
Query: 250 AXXXXXXXXXXXXFCKCVPHFYPTIKGYKQCT-LRELECIAKH 291
C C P Y + K+CT L C+ H
Sbjct: 364 NCVSLCKAKFFMENCGCTPAVYNNERNLKECTPFETLACVNNH 406
>Z82266-1|CAB05178.2| 626|Caenorhabditis elegans Hypothetical
protein F23B2.3 protein.
Length = 626
Score = 39.5 bits (88), Expect = 0.005
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 17 FPAVTICDASPVDDELLQEYIESV--WGSDPPERAAEMLQWLATLSYSSIAEHAAEYLAE 74
FP+VT+C+ +P+ + YIE++ G P+ ++ W + + + +
Sbjct: 139 FPSVTVCNFTPIR----KSYIEAMNRTGDVSPDMINYLMNWFTEIPI--LLGNTDQQSLN 192
Query: 75 PGLVGENENNVPEPARDSKEAVFKVVRHCETLFYDCVWKGDSEECCDLLIPVFTEMGFCY 134
G E P + C L C ++G+S +CC L P T +G C+
Sbjct: 193 KGNEELREYQSIHPNFTVDQFFMDASFDCSDLMKLCSFQGESFDCCSLASPTLTPVGKCF 252
Query: 135 AFN 137
+
Sbjct: 253 TLD 255
>U64851-2|AAC47987.1| 613|Caenorhabditis elegans Hypothetical
protein F28A12.1 protein.
Length = 613
Score = 37.1 bits (82), Expect = 0.025
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 8/133 (6%)
Query: 15 VPFPAVTICDASPVDDELLQEYIESVWGSDPPERAAEMLQWLATLSYSSIA--EHAAEYL 72
V FP+VT+C+ +PV +++ S + + E+L +L +S+ +A +
Sbjct: 102 VYFPSVTVCNLNPVKTSFIKKLNSS------GDLSEELLNYLLATKTNSMYMFNNANIFE 155
Query: 73 AEPGLVGENENNVPEPARDSKEAVFKVVRHCETLFYDCVWKGDSEECCDLLIPVFTEMGF 132
+ + P + + C+ LF C + G CC + T +G
Sbjct: 156 LKRAHLNALVYLANHPDFEIVNFLNSAQFDCDELFETCFYGGKQFNCCKYMTQSITSLGR 215
Query: 133 CYAFNSRHAEKIW 145
C+ N R+ W
Sbjct: 216 CWELNLRNETDAW 228
>U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory
abnormality protein10 protein.
Length = 724
Score = 35.9 bits (79), Expect = 0.059
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 264 CKCVPHFYPTIKGYKQCTL---RELECIAKHASAITDVT---KCSCELGCSHTVY 312
C C +P+I G + C + EC+ KH I ++ KC C+ C+ T+Y
Sbjct: 555 CGCSDPRFPSIGGVQPCQVFNKNHRECLEKHTHQIGEIHGSFKCRCQQPCNQTIY 609
Score = 28.7 bits (61), Expect = 8.9
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 16 PFPAVTICDASPVDDELLQEY 36
PFPA+T+C+ +P D +++ +
Sbjct: 163 PFPAITLCNLNPYKDSVIRSH 183
>L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degenerin
protein.
Length = 724
Score = 35.9 bits (79), Expect = 0.059
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 264 CKCVPHFYPTIKGYKQCTL---RELECIAKHASAITDVT---KCSCELGCSHTVY 312
C C +P+I G + C + EC+ KH I ++ KC C+ C+ T+Y
Sbjct: 555 CGCSDPRFPSIGGVQPCQVFNKNHRECLEKHTHQIGEIHGSFKCRCQQPCNQTIY 609
Score = 28.7 bits (61), Expect = 8.9
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 16 PFPAVTICDASPVDDELLQEY 36
PFPA+T+C+ +P D +++ +
Sbjct: 163 PFPAITLCNLNPYKDSVIRSH 183
>Z98877-13|CAB63410.2| 254|Caenorhabditis elegans Hypothetical
protein Y69H2.13 protein.
Length = 254
Score = 35.5 bits (78), Expect = 0.078
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 264 CKCVPHFYPTIKGYKQCTLRELECIAKHASAITDV---TKCSCELGCSHTVYEV 314
C+C+ YP C L E C+ + + A D + C C L CS+ Y V
Sbjct: 109 CQCMDPRYPKAPNATSCQLSERSCVTEASDAAGDPSTWSSCVCPLPCSNQEYSV 162
>Z67990-5|CAA91936.2| 638|Caenorhabditis elegans Hypothetical
protein F02D10.5 protein.
Length = 638
Score = 35.5 bits (78), Expect = 0.078
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 17 FPAVTICDASPVDDELLQEY--IESVWGSDPPERAAEMLQWLATLSYSSIAEHAAEYLAE 74
FP VTIC+ +P++ L+E +S W + + ++ S EH + L E
Sbjct: 88 FPEVTICNLNPLNTTKLEELNISKSTW--------TYIFGYFDEITTS---EHKSTKLGE 136
Query: 75 PGLVGENENNVPEPARDS---KEAVFKVVRHCETLFYDCVWKGDS-EECCDLLIPVFTEM 130
+ E NN E + K + V + CE F C + + CC+ + TE+
Sbjct: 137 EQFL-EIMNNYQELTKQEFNVKNFLKSVSKSCEETFISCSFGREKLHNCCEHVTTEMTEV 195
Query: 131 GFCYAFNSRHAEKIWPWQS 149
G C+ ++ + +K W S
Sbjct: 196 GVCFRLSNVN-KKYRQWYS 213
>AB012617-1|BAA33488.1| 638|Caenorhabditis elegans FLR-1 protein.
Length = 638
Score = 35.5 bits (78), Expect = 0.078
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 17 FPAVTICDASPVDDELLQEY--IESVWGSDPPERAAEMLQWLATLSYSSIAEHAAEYLAE 74
FP VTIC+ +P++ L+E +S W + + ++ S EH + L E
Sbjct: 88 FPEVTICNLNPLNTTKLEELNISKSTW--------TYIFGYFDEITTS---EHKSTKLGE 136
Query: 75 PGLVGENENNVPEPARDS---KEAVFKVVRHCETLFYDCVWKGDS-EECCDLLIPVFTEM 130
+ E NN E + K + V + CE F C + + CC+ + TE+
Sbjct: 137 EQFL-EIMNNYQELTKQEFNVKNFLKSVSKSCEETFISCSFGREKLHNCCEHVTTEMTEV 195
Query: 131 GFCYAFNSRHAEKIWPWQS 149
G C+ ++ + +K W S
Sbjct: 196 GVCFRLSNVN-KKYRQWYS 213
>Z98877-2|CAB11570.1| 907|Caenorhabditis elegans Hypothetical
protein Y69H2.2 protein.
Length = 907
Score = 35.1 bits (77), Expect = 0.10
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 264 CKCVPHFYPTIKGYKQCTLRELECIAKHASAITDV---TKCSCELGCSHTVYEV 314
C C+ YP C L E C+ + + A D + C C L CS+ Y V
Sbjct: 759 CNCMDPRYPQAPNSTSCQLSERSCVTEASEAAGDPSTWSSCVCPLPCSNQEYSV 812
>U88310-2|AAB42338.2| 635|Caenorhabditis elegans Hypothetical
protein C24G7.2 protein.
Length = 635
Score = 34.3 bits (75), Expect = 0.18
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 10/130 (7%)
Query: 17 FPAVTICDASPVDDELLQEYIESVWGSDPPERAAEMLQW---LATLSYSSIAEHAAEYLA 73
FP +TIC+ +P+ + E ++ G P M++W + TL + E
Sbjct: 148 FPLITICNLNPIRKTYVNEINKT--GEVSPPMINYMMKWFTEIPTLIGGADRPTLHEGNE 205
Query: 74 EPGLVGENENNVPEPARDSKEAVFKVVRHCETLFYDCVWKGDSEECCDLLIPVFTEMGFC 133
E L +N N + C +F C ++G+ +CC L V T +G C
Sbjct: 206 ELKLYMKNHLNFTVDSFFMNSGF-----SCPDIFKLCSFQGEIFDCCTLSTEVLTPLGKC 260
Query: 134 YAFNSRHAEK 143
+ + + K
Sbjct: 261 FTLDLSSSTK 270
>U88310-1|AAB42340.1| 663|Caenorhabditis elegans Hypothetical
protein C24G7.4 protein.
Length = 663
Score = 34.3 bits (75), Expect = 0.18
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 18/131 (13%)
Query: 17 FPAVTICDASPVDDELLQEYIESVWGSDPPERAAEMLQWL--ATLSYSSIAEHAAEYLAE 74
FPAVT+C+ +P+ ++E +V G E +LQ A +S++ H +
Sbjct: 128 FPAVTVCNFNPIKKSYVREL--NVSGDLTGETLEYLLQTNMDAMFLFSNLDRHNLK---- 181
Query: 75 PGLVGENENNVPEPARDSKEAVFKVVRHCETLFYDCVWKGDSEECCDLLIPVFTEMGFCY 134
E + F++++ T YDC G+ +CC + T +G C+
Sbjct: 182 -------ETHDEAETYFQNHTDFQIIKFLRTAGYDC---GEIFDCCKYMKQKVTSLGKCW 231
Query: 135 AFNSRHAEKIW 145
+ R+ W
Sbjct: 232 ELDLRNLAPEW 242
>U58750-12|AAB00652.2| 266|Caenorhabditis elegans Hypothetical
protein F55G1.12 protein.
Length = 266
Score = 32.7 bits (71), Expect = 0.55
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 264 CKCVPHFYPTIKGYKQCTLRELECIAKHASAITDVT---KCSCELGCSHTVYEVEKLS 318
C C+ YP C++ + CI + + D + +C+C L CS TVY KLS
Sbjct: 117 CGCMDPRYPMPNDGISCSISQKTCIDELVDSRGDPSTWPECTCPLPCSQTVY-TSKLS 173
>Z81015-3|CAB02660.1| 411|Caenorhabditis elegans Hypothetical
protein C11E4.3 protein.
Length = 411
Score = 32.3 bits (70), Expect = 0.72
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 103 CETLFYDCVWKGDSEECC-DLLI-PVFTEMGFCY 134
CE LFY+C G +CC DL++ V G CY
Sbjct: 189 CEDLFYECQLAGKILDCCNDLMVRRVVMRRGICY 222
>U97404-2|AAB93309.1| 795|Caenorhabditis elegans
Acid-sensing/amiloride-sensitiveion channel family
protein 1 protein.
Length = 795
Score = 31.1 bits (67), Expect = 1.7
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Query: 264 CKCVPHFYPTIKGYKQCTLRE---LECIAKHASAITDVTK---CSCELGCSHTVYEVEKL 317
C C +P + K C + + ECI T +K CSC+ C+ VY V
Sbjct: 610 CGCGDPRFPPYRESKNCPVDDPYKRECIKNEMHVATRDSKKLGCSCKQPCNQDVYSVSYS 669
Query: 318 SETDATRGGESNSLETEFVSWPMVRYKRE 346
+ G+ + + + YKRE
Sbjct: 670 ASRWPAIAGDLSGCPLGMAAHHCLNYKRE 698
>Z69360-5|CAC42291.2| 732|Caenorhabditis elegans Hypothetical
protein F25H8.5c protein.
Length = 732
Score = 29.9 bits (64), Expect = 3.9
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 387 AAVRDADQLRRERAERLAQPKPPHNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYSPPP 446
A R ++ R R + P PP N L P PP +P + PPQ P P
Sbjct: 75 ADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQP 134
>Z69360-4|CAA93286.2| 369|Caenorhabditis elegans Hypothetical
protein F25H8.5b protein.
Length = 369
Score = 29.9 bits (64), Expect = 3.9
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 387 AAVRDADQLRRERAERLAQPKPPHNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYSPPP 446
A R ++ R R + P PP N L P PP +P + PPQ P P
Sbjct: 75 ADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQP 134
>Z69360-3|CAA93285.2| 780|Caenorhabditis elegans Hypothetical
protein F25H8.5a protein.
Length = 780
Score = 29.9 bits (64), Expect = 3.9
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 387 AAVRDADQLRRERAERLAQPKPPHNLSLIPWWKEPPIPGSVRPILVRAKDSMPPQYSPPP 446
A R ++ R R + P PP N L P PP +P + PPQ P P
Sbjct: 75 ADARRRERCRNRRPQPTPGPPPPRNNCLPPPGPPPPCQQYQQPQPPPCQRPQPPQPQPQP 134
>X53314-1|CAA37396.1| 294|Caenorhabditis elegans deg-1 product
protein.
Length = 294
Score = 29.5 bits (63), Expect = 5.1
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 264 CKCVPHFYPTIKGYKQCTLRELE---CIAKHASAITD-------VTKCSCELGCSHTVYE 313
C C +P +GY+ C+ C+ K+ ++ D + KC C+ C ++E
Sbjct: 102 CSCGDPRFPVPEGYRHCSAFNATARTCLEKNIGSVGDFHHITQKMDKCVCKQSCEEIIHE 161
Query: 314 V 314
V
Sbjct: 162 V 162
>U67951-5|AAB07574.2| 778|Caenorhabditis elegans Degeneration of
certain neuronsprotein 1 protein.
Length = 778
Score = 29.5 bits (63), Expect = 5.1
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 264 CKCVPHFYPTIKGYKQCTLRELE---CIAKHASAITD-------VTKCSCELGCSHTVYE 313
C C +P +GY+ C+ C+ K+ ++ D + KC C+ C ++E
Sbjct: 586 CSCGDPRFPVPEGYRHCSAFNATARTCLEKNIGSVGDFHHITQKMDKCVCKQSCEEIIHE 645
Query: 314 V 314
V
Sbjct: 646 V 646
>L34414-1|AAA99524.1| 778|Caenorhabditis elegans degenerin protein.
Length = 778
Score = 29.5 bits (63), Expect = 5.1
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 264 CKCVPHFYPTIKGYKQCTLRELE---CIAKHASAITD-------VTKCSCELGCSHTVYE 313
C C +P +GY+ C+ C+ K+ ++ D + KC C+ C ++E
Sbjct: 586 CSCGDPRFPVPEGYRHCSAFNATARTCLEKNIGSVGDFHHITQKMDKCVCKQSCEEIIHE 645
Query: 314 V 314
V
Sbjct: 646 V 646
>AL117195-11|CAB55017.1| 228|Caenorhabditis elegans Hypothetical
protein Y57A10A.14 protein.
Length = 228
Score = 29.5 bits (63), Expect = 5.1
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 46 PERAAEMLQWLATLSYSSIAEH-AAEYLAEPGLVGENENNVPEPARDSKEAVFKVVRHCE 104
P++ AE+ QWL T Y SI +A+ +P V E+N P D++E ++V E
Sbjct: 73 PKKRAELYQWLNTSYYGSIIRKVSAQVPYQPDYV-RIEDNSTIPIFDNEEDYNEIVGGAE 131
>Z73973-5|CAA98267.2| 882|Caenorhabditis elegans Hypothetical
protein F25D1.4 protein.
Length = 882
Score = 29.1 bits (62), Expect = 6.7
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 104 ETLFYDCVWKGDSEECCDLLIPVFTEMGFCYA 135
+ LF C + G S C D + P++T G CY+
Sbjct: 174 DDLFVSCEF-GKSGSCQDEIRPIYTPFGLCYS 204
>U97592-2|AAB52870.1| 462|Caenorhabditis elegans Temporarily
assigned gene nameprotein 150, isoform a protein.
Length = 462
Score = 29.1 bits (62), Expect = 6.7
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 54 QWLAT-LSYSSIAEHAAEYLAEPGLVGENENNVPEPARDSKEAVFKVVR-----HCETLF 107
+ +AT +SY + + + EP EN+N++P+ R + +F VR H T+
Sbjct: 72 EMIATEISYVADLKDIIIHYLEPFEATENQNSLPDTLRGKPDCLFGNVRELYKFHHRTVL 131
Query: 108 YDCVWKGDSEECCDLLI 124
D V + E C +L+
Sbjct: 132 EDLVAARSTAEMCRVLM 148
>U97592-1|AAB52871.3| 638|Caenorhabditis elegans Temporarily
assigned gene nameprotein 150, isoform b protein.
Length = 638
Score = 29.1 bits (62), Expect = 6.7
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 54 QWLAT-LSYSSIAEHAAEYLAEPGLVGENENNVPEPARDSKEAVFKVVR-----HCETLF 107
+ +AT +SY + + + EP EN+N++P+ R + +F VR H T+
Sbjct: 248 EMIATEISYVADLKDIIIHYLEPFEATENQNSLPDTLRGKPDCLFGNVRELYKFHHRTVL 307
Query: 108 YDCVWKGDSEECCDLLI 124
D V + E C +L+
Sbjct: 308 EDLVAARSTAEMCRVLM 324
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 8.9
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 406 PKPPHNLSLIPWWKEPPIPGSV-RPILVRAKDSMPPQYSPPPGYT 449
P PP +++ +P PP PG RP + PP PPPG T
Sbjct: 264 PPPPPSVTPMPP-PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT 307
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 8.9
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 27 PVDDELLQEYIESVWGSDPPERAAEMLQWLATLSYSSIAEHA-AEYLAEPGLVGENENNV 85
P DEL + S PP + M + + +S S AEH E L++ ++ EN+N++
Sbjct: 3012 PTVDELSDHIVRKKSSSVPPAASEIMKETMNGISTSVDAEHTKLENLSQSFMLLENQNSI 3071
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 8.9
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 406 PKPPHNLSLIPWWKEPPIPGSV-RPILVRAKDSMPPQYSPPPGYT 449
P PP +++ +P PP PG RP + PP PPPG T
Sbjct: 274 PPPPPSVTPMPP-PMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT 317
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.134 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,853,654
Number of Sequences: 27539
Number of extensions: 505097
Number of successful extensions: 1247
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1219
Number of HSP's gapped (non-prelim): 46
length of query: 453
length of database: 12,573,161
effective HSP length: 84
effective length of query: 369
effective length of database: 10,259,885
effective search space: 3785897565
effective search space used: 3785897565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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