GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000351-TA|BGIBMGA000351-PA|IPR000299|Band 4.1,
IPR000798|Ezrin/radixin/moesin ERM, IPR007858|Dpy-30
         (1156 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         25   4.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    25   4.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    24   5.2  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   6.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   9.1  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 341 SGKTEYQTTQQNRARRTVQFERRPSQRFARRQSHVLREREKQNSTKSEVNPSET 394
           +GKT+Y    ++  R+  Q   R +Q  ++RQ    RE + + +       S T
Sbjct: 187 TGKTQYNLNSKSLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRPRTSRT 240


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 426 QKSNVEPDLLDTQNDTKLSSVS 447
           Q++  + D+LD+Q  T LSSVS
Sbjct: 5   QETTPKRDMLDSQEKTPLSSVS 26


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 13/64 (20%), Positives = 32/64 (50%)

Query: 343 KTEYQTTQQNRARRTVQFERRPSQRFARRQSHVLREREKQNSTKSEVNPSETNDETHNNS 402
           ++  Q   +NR  +  Q +++ +Q+ +  +S  L+ +     TK+   P   N+ T  +S
Sbjct: 110 ESRVQVWFKNRRAKCRQQQKQHNQQQSVEKSSKLKNKSAPILTKTSPTPVSINNNTSTSS 169

Query: 403 AETA 406
           + ++
Sbjct: 170 SASS 173


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 6.9
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 2/103 (1%)

Query: 378 EREKQNSTKSEVN--PSETNDETHNNSAETATISPASDVDALSRKSSAKSQKSNVEPDLL 435
           +R   N +  +VN  PS T+  +      T  I PA D    S          N    L+
Sbjct: 50  QRLPANFSFGQVNSPPSSTSSGSLGQFPATPVIDPAKDPAIYSNLLPRPGSNDNSWESLI 109

Query: 436 DTQNDTKLSSVSDHVAEPKDSFTSINEQSKISRILKGNNGLKL 478
           +    ++ S +   V   +   +  N+     R+L   + L++
Sbjct: 110 EVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQM 152


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.4 bits (48), Expect = 9.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 578 NYKIHYDIENDVIAIARKYKSQIRATVIASGITYGG 613
           N  I   I+N  +++     S   AT + S +TY G
Sbjct: 291 NCPIEVSIDNHTLSVISTDGSDFNATEVDSLVTYAG 326


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,190
Number of Sequences: 317
Number of extensions: 10252
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 7
length of query: 1156
length of database: 114,650
effective HSP length: 64
effective length of query: 1092
effective length of database: 94,362
effective search space: 103043304
effective search space used: 103043304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)