Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000350-TA|BGIBMGA000350-PA|undefined
         (142 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC060875-1|AAH60875.1|  345|Homo sapiens transmembrane protein 1...    31   1.9  
BC054487-1|AAH54487.1|  345|Homo sapiens transmembrane protein 1...    31   1.9  
BC048117-1|AAH48117.1|  169|Homo sapiens TMEM144 protein protein.      31   1.9  
BC036551-1|AAH36551.1|  169|Homo sapiens TMEM144 protein protein.      31   1.9  
AK002017-1|BAA92037.1|  345|Homo sapiens protein ( Homo sapiens ...    31   1.9  

>BC060875-1|AAH60875.1|  345|Homo sapiens transmembrane protein
          144 protein.
          Length = 345

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 28 DITDVLFLSAGTGAGLWLWARPHMAAAVPARRFSWAFLGGCLWPLGSIFLWAILRS 83
          D  D +FL     A +WL A          + + +A LGGC+W  G+I +  I+++
Sbjct: 33 DTGDGMFLQWVLCAAIWLVALVVNLILHCPKFWPFAMLGGCIWATGNIAVVPIIKT 88


>BC054487-1|AAH54487.1|  345|Homo sapiens transmembrane protein
          144 protein.
          Length = 345

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 28 DITDVLFLSAGTGAGLWLWARPHMAAAVPARRFSWAFLGGCLWPLGSIFLWAILRS 83
          D  D +FL     A +WL A          + + +A LGGC+W  G+I +  I+++
Sbjct: 33 DTGDGMFLQWVLCAAIWLVALVVNLILHCPKFWPFAMLGGCIWATGNIAVVPIIKT 88


>BC048117-1|AAH48117.1|  169|Homo sapiens TMEM144 protein protein.
          Length = 169

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 28 DITDVLFLSAGTGAGLWLWARPHMAAAVPARRFSWAFLGGCLWPLGSIFLWAILRS 83
          D  D +FL     A +WL A          + + +A LGGC+W  G+I +  I+++
Sbjct: 33 DTGDGMFLQWVLCAAIWLVALVVNLILHCPKFWPFAMLGGCIWATGNIAVVPIIKT 88


>BC036551-1|AAH36551.1|  169|Homo sapiens TMEM144 protein protein.
          Length = 169

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 28 DITDVLFLSAGTGAGLWLWARPHMAAAVPARRFSWAFLGGCLWPLGSIFLWAILRS 83
          D  D +FL     A +WL A          + + +A LGGC+W  G+I +  I+++
Sbjct: 33 DTGDGMFLQWVLCAAIWLVALVVNLILHCPKFWPFAMLGGCIWATGNIAVVPIIKT 88


>AK002017-1|BAA92037.1|  345|Homo sapiens protein ( Homo sapiens
          cDNA FLJ11155 fis, clone PLACE1006935. ).
          Length = 345

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 28 DITDVLFLSAGTGAGLWLWARPHMAAAVPARRFSWAFLGGCLWPLGSIFLWAILRS 83
          D  D +FL     A +WL A          + + +A LGGC+W  G+I +  I+++
Sbjct: 33 DTGDGMFLQWVLCAAIWLVALVVNLILHCPKFWPFAMLGGCIWATGNIAVVPIIKT 88


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.326    0.141    0.461 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,271,231
Number of Sequences: 224733
Number of extensions: 968168
Number of successful extensions: 8198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8193
Number of HSP's gapped (non-prelim): 10
length of query: 142
length of database: 73,234,838
effective HSP length: 83
effective length of query: 59
effective length of database: 54,581,999
effective search space: 3220337941
effective search space used: 3220337941
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)