Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000350-TA|BGIBMGA000350-PA|undefined
         (142 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40640.2 68415.m05013 expressed protein                             27   3.7  
At2g40640.1 68415.m05012 expressed protein                             27   3.7  
At5g47120.1 68418.m05809 Bax inhibitor-1 putative / BI-1 putativ...    27   6.4  
At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 fam...    27   6.4  
At3g10915.2 68416.m01315 reticulon family protein low similarity...    26   8.5  

>At2g40640.2 68415.m05013 expressed protein
          Length = 352

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 118 FCGELHLPEETYTPNSDDERYDIDI 142
           FCG     +ET   + DDE YD+ I
Sbjct: 79  FCGNRIEKDETMYSDGDDEEYDVSI 103


>At2g40640.1 68415.m05012 expressed protein
          Length = 383

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 118 FCGELHLPEETYTPNSDDERYDIDI 142
           FCG     +ET   + DDE YD+ I
Sbjct: 79  FCGNRIEKDETMYSDGDDEEYDVSI 103


>At5g47120.1 68418.m05809 Bax inhibitor-1 putative / BI-1 putative
           SP:Q9LD45: Bax inhibitor-1 (BI-1) (AtBI-1). [Mouse-ear
           cress]             {Arabidopsis thaliana}
          Length = 247

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 52  AAAVPARRFSWAFLGGCLWPLGSIFLWAILRSSV 85
           AAA+ ARR  + +LGG L    S+ +W    SS+
Sbjct: 135 AAAMLARRREYLYLGGLLSSGLSMLMWLQFASSI 168


>At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 823

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)

Query: 60  FSWAFLGGCLWPLGSIFLWAILRS 83
           FS  FLGGCL+ L  + L+AI+R+
Sbjct: 421 FSTGFLGGCLFSL-VVALFAIIRT 443


>At3g10915.2 68416.m01315 reticulon family protein low similarity
          to rS-Rex-s [Rattus norvegicus] GI:1143717,
          neuroendocrine-specific protein C [Homo sapiens]
          GI:307311; contains Pfam profile PF02453: Reticulon
          Length = 226

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 27 RDITDVLFLSAGTGAGLWLWARPHMAAAV 55
          R IT   F+  G  A L LW R H++  V
Sbjct: 28 RQITVHQFMGGGKAADLLLWRRRHLSLGV 56


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.141    0.461 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,522,878
Number of Sequences: 28952
Number of extensions: 136418
Number of successful extensions: 355
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 5
length of query: 142
length of database: 12,070,560
effective HSP length: 74
effective length of query: 68
effective length of database: 9,928,112
effective search space: 675111616
effective search space used: 675111616
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)