GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000350-TA|BGIBMGA000350-PA|undefined
         (142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    30   0.16 
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   3.4  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    25   3.4  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   5.9  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    24   7.8  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    24   7.8  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 11/86 (12%)

Query: 32   VLFLSAGTGAGLWL---WARPHMAAAVPARRFSWAFLGGCLW-------PLGSIFLWAIL 81
            +     G GA  WL   WA  ++   +P   +S  +LG  LW        + S+ +  IL
Sbjct: 2264 ICVFGVGLGAPRWLQQFWATSNIGLYLPWAGYSGPYLGRTLWLWLGVLDAIQSVGIGMIL 2323

Query: 82   RSSVGQRPVIGTII-GVTTGAMLTNI 106
              ++ +R V  T++ G   GA+ T I
Sbjct: 2324 LQTLTRRHVASTLMTGQIVGAVATMI 2349


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 70  WPLGSIFLWAILRSSVGQRPVIG-TIIGVTTGAMLTNIALD----YFHYIELMFCGELHL 124
           W +G  + W++L S+VGQ   +G   I     +++ N+ +     Y+++ +L F   +++
Sbjct: 508 WFVGPNYTWSMLGSAVGQNGNVGPRQISEEPMSIIFNLGISNNWAYYYFRDLSFPAVMYI 567

Query: 125 PEETYTPNSDD 135
                  + DD
Sbjct: 568 DYIRIYQDPDD 578


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 7   YTTLSVSVMNPHLMVRLFPQRDITDVLFLSAGTG-AGLWLWARPHMAAAVPARRFSWAFL 65
           YT  ++S   P  +V++     I  V   +A T  AG      P   A VP   F WA  
Sbjct: 157 YTVFNISCALPRNIVQMIISHFIIGVAGSTALTNVAGGIPDLFPEDTAGVPMSLFVWACA 216

Query: 66  GGCL 69
           GG +
Sbjct: 217 GGAI 220


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 43   LWLWARPHMAAAVPARRFSWAFLGGCLWPLGSIFLWAIL 81
            LW+   P  A A PA  FS  + G      G++  WA L
Sbjct: 1125 LWIVFMPIYAVAAPAIGFSKEYYGIIPHLYGNLKFWASL 1163


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 41   AGLWLWARPH 50
            +G W WARPH
Sbjct: 1185 SGTWSWARPH 1194


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 89  PVIGTIIGVTTGAMLTNIALDYFHYIE---LMFC---GELHLPEETYTPNSDDERYDIDI 142
           P +  ++ V T  +   +A  + +Y+    L  C   G+  L  ETY  N D+    ID+
Sbjct: 204 PRLRCVVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDV 263


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.141    0.461 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,065
Number of Sequences: 5004
Number of extensions: 25006
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 2,362,478
effective HSP length: 66
effective length of query: 76
effective length of database: 2,032,214
effective search space: 154448264
effective search space used: 154448264
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 50 (24.2 bits)