Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000350-TA|BGIBMGA000350-PA|undefined
(142 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0421 + 3181139-3184207 30 0.82
12_02_0119 + 13886982-13887323 29 1.4
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 29 1.4
01_05_0568 + 23339476-23339598,23339686-23339927,23340765-23341308 28 3.3
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632... 27 4.4
04_03_0260 - 13580396-13582990 27 4.4
02_02_0460 + 10518598-10518629,10519751-10519921,10521817-105219... 27 5.8
09_06_0298 - 22117451-22118698 27 7.6
04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061 27 7.6
03_01_0391 - 3030532-3031344,3033177-3033434 27 7.6
>01_01_0421 + 3181139-3184207
Length = 1022
Score = 29.9 bits (64), Expect = 0.82
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 10 LSVSVMNPHLMVRLFPQRDITDVLFLSAGTGAGLWLWARPHMAAAVPARRFSWAFLG 66
LS N L V L ++ I VLFL +G G GL +A VP R+ W+ LG
Sbjct: 964 LSKGCDNMTLNVTLSDRKSIDIVLFLFSGLGFGLGFAIAIVIAWGVPIRK--WSLLG 1018
>12_02_0119 + 13886982-13887323
Length = 113
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 36 SAGTGAGLWLWARPHMAAAVPARRFSWAFLGGCLW 70
S G G W W P MAAA A S L C W
Sbjct: 4 SDGAGGSSWHWRLP-MAAAAAADTASGRLLAACWW 37
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 29.1 bits (62), Expect = 1.4
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 56 PARRFSWAFLGGCLWPLGSIFLWAILRSSVGQRPVIGTIIGVTTGAMLTNIALDYFHYIE 115
PARR S A C WP I + ++V P T + + A T+ ++ +E
Sbjct: 183 PARRRSLADSLACAWPFSWITCRWLKGNAVAAEPAAATPSPLPSPA--TDTVAAWYRAVE 240
Query: 116 LMFCGELHLPEETY 129
CGE P + Y
Sbjct: 241 ---CGEFSFPAQVY 251
>01_05_0568 +
23339476-23339598,23339686-23339927,23340765-23341308
Length = 302
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 33 LFLSAGTGAGLWLWAR--PHMAAAVPARRFSWAFLGG 67
L LS G G +W R PH+A F W F GG
Sbjct: 16 LVLSHGYGGSQAIWDRVLPHLAETNKVVLFDWDFSGG 52
>06_03_0640 -
23059473-23060489,23060592-23060651,23063163-23063283,
23063476-23065496
Length = 1072
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 38 GTGA-GLWLWARPHMAAAVPAR 58
GT A G+ +W RPH++ +PAR
Sbjct: 785 GTSAIGVVVWRRPHVSPRIPAR 806
>04_03_0260 - 13580396-13582990
Length = 864
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 77 LWAILRSSVGQRPVIGTIIGVTTGAMLTNIALDY 110
+W + S G+RP + T++ V G M LDY
Sbjct: 801 MWCLQNDS-GRRPSMSTVVKVLEGVMRVENCLDY 833
>02_02_0460 +
10518598-10518629,10519751-10519921,10521817-10521940,
10523596-10523640
Length = 123
Score = 27.1 bits (57), Expect = 5.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 35 LSAGTGAGLWLWARPH 50
++ GTG G W W +PH
Sbjct: 107 VNRGTGMGTWNWKKPH 122
>09_06_0298 - 22117451-22118698
Length = 415
Score = 26.6 bits (56), Expect = 7.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 42 GLWLWARPHMAAAVPARRFSWAFLGGCLWPLGSIFLWAILRSSVGQR 88
G +WA H+AAA + GG L G++ LW R R
Sbjct: 263 GELMWAYVHVAAAALLDHGHYPLKGGDLVGSGAVSLWVYSREKKSGR 309
>04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061
Length = 346
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 52 AAAVPARRFSWAFLGGCLWPLGSIFLWAILRSSV-GQRPVIGTIIGVTTGAMLTNIAL 108
AAA + A GGC W G++F WA+ V +G +G G T+ L
Sbjct: 270 AAAAATFFVACAASGGCGWSWGALF-WAVPGEGVRSAGDAVGAALGFALGFAQTHCFL 326
>03_01_0391 - 3030532-3031344,3033177-3033434
Length = 356
Score = 26.6 bits (56), Expect = 7.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 47 ARPHMAAAVPARRFSWAFLGGCLWPLGSIFLWAILRSSVGQRPVIGTIIGVTTGAMLTNI 106
ARPH + P R + A G W L LW++L + R + ++ + TG + ++I
Sbjct: 54 ARPHDGVSAPPREAAPAAAVGPPWKL----LWSLLPKA--SRAALFLLVALVTGTLQSSI 107
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.141 0.461
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,607,011
Number of Sequences: 37544
Number of extensions: 195978
Number of successful extensions: 502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 10
length of query: 142
length of database: 14,793,348
effective HSP length: 75
effective length of query: 67
effective length of database: 11,977,548
effective search space: 802495716
effective search space used: 802495716
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)
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