GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000350-TA|BGIBMGA000350-PA|undefined
         (142 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54235-1|CAA90971.1|  416|Caenorhabditis elegans Hypothetical pr...    44   5e-05
AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ...    26   8.8  

>Z54235-1|CAA90971.1|  416|Caenorhabditis elegans Hypothetical
           protein C09G9.1 protein.
          Length = 416

 Score = 43.6 bits (98), Expect = 5e-05
 Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 3   GLASYTTLSVSVMNPHLMVRLFPQRD--ITDVLFLSAGTGAGLWLWARPHMAAAVPARRF 60
           G  S+T  +V + +P+++  LFP  D  +++ +  +A  G G +++ R H+    P  R 
Sbjct: 45  GALSHTLYTVHLFSPNIISSLFPTGDLAVSNTILFNANVGLGFYVYFRRHLHRVNPWERV 104

Query: 61  SWAFLGGCLWPLGSIFLWAILRSSV 85
            ++ L   L+  GS+    ++++ +
Sbjct: 105 EFSVLSSTLFNFGSLLAAVLIKALI 129


>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
           protein Y18H1A.3 protein.
          Length = 1258

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 102 MLTNIALDYFHYIELMFCGELH 123
           +L+NI L +FH   L  CGE H
Sbjct: 339 LLSNILLGFFHSPYLAQCGERH 360


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.141    0.461 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,543,113
Number of Sequences: 27539
Number of extensions: 131790
Number of successful extensions: 315
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 312
Number of HSP's gapped (non-prelim): 2
length of query: 142
length of database: 12,573,161
effective HSP length: 75
effective length of query: 67
effective length of database: 10,507,736
effective search space: 704018312
effective search space used: 704018312
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)