Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000349-TA|BGIBMGA000349-PA|IPR000905|Peptidase M22,
glycoprotease, IPR009180|Peptidase M22, O-sialoglycoprotein
endopeptidase
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...   117   3e-27
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    91   2e-19
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   8.4  

>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score =  117 bits (281), Expect = 3e-27
 Identities = 101/352 (28%), Positives = 162/352 (46%), Gaps = 37/352 (10%)

Query: 32  IETSCDDTGCXXXXXXXXXXXXS-----LKSQNLV--HLRNGGIIPDVAQDLHRKYIEPT 84
           IETSCDDT                    L +   +  +   GGI P +    H+K +   
Sbjct: 44  IETSCDDTSVSVVRTSDSSSHCQNEIICLNTHRTISKYEAYGGIHPTIVIHEHQKNLAKV 103

Query: 85  VTETLLKANLL-MKDISAIAVTVKPGLPLSLAVGMKYAKHLARVNAKPIIPIHHMEAHAL 143
           +  T+  A    + D   IAVT  PG+   LAVG+  AK LA    KP++ +HHM+AHAL
Sbjct: 104 IQRTISDAARSGITDFDLIAVTRGPGMIGPLAVGLNTAKGLAVGLQKPLLAVHHMQAHAL 163

Query: 144 TVRMEHNVNFPYLVLLISGGHCLLAVVQNINKFLLLGKSIDMAPGELFDKIARRMKLRNV 203
            V++E +++FPYL +L+SGGH +L    ++    ++  + D+A G+  DK A   K   +
Sbjct: 164 AVQLEKSIDFPYLNILVSGGHTMLVYSNSLLNHEIIVTTSDIAVGDYLDKCA---KYLGI 220

Query: 204 PELSTMCGGQAVETAALRATNPEMFNL--PIPL---VQVKDCNFSFNGLKTSVLYHLRKK 258
           P  + M    A+E  A    N   ++L  PIPL    +V   +FSF+GL++     +RK 
Sbjct: 221 PWDNEM-PAAALEQFASPEINSTSYSLKPPIPLNTREKVHSASFSFSGLESYACRIIRKT 279

Query: 259 EKEHKVVADALIPEISNLCCAALIATTKHLVHRTQRAMQFCSINNLIPENNKRLVVSGGV 318
                      + E          A  +H+  +T  A++   ++ +     K LV SGGV
Sbjct: 280 PLN--------LSEKKFFAYQLQYAAFQHICQKTLLALKRLDLSKV-----KYLVCSGGV 326

Query: 319 ACNNYIFNALKAASVDYGY-------NVYRPSMKLCTDNGIMIAWNGLEKWR 363
           A N  +   L    +   +        +  PS  +C+DN  MI +  ++ ++
Sbjct: 327 ARNELLKKMLNDTLMVLQFEHQPTDIKLVYPSPDICSDNAAMIGYTAIQMFK 378


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 79/295 (26%), Positives = 128/295 (43%), Gaps = 28/295 (9%)

Query: 67  GIIPDVAQDLHRKYIEPTVTETLLKANLLMKDISAIAVTVKPGLPLSLAVGMKYAKHLAR 126
           G +P      HR +I P + +   +A +  KDI  I  T  PG+   L      A+ L+ 
Sbjct: 47  GFLPSDTAKHHRAWIIPLIKQAFAEAKISFKDIDCICFTKGPGIGAPLNSVALCARMLSL 106

Query: 127 VNAKPIIPIHHMEAHALTVRMEHNVNFPYLVLLISGGHCLLAVVQNINKFLLLGKSIDMA 186
           ++ KP++ ++H   H    R       P +VL +SGG+  + +  +  K+ + G+++D+A
Sbjct: 107 IHKKPLVAVNHCIGHIEMGREITGAQNP-VVLYVSGGNTQV-IAYSEKKYRIFGETLDIA 164

Query: 187 PGELFDKIARRMKLRNVPELSTMCGGQAVETAALRATNPEMFNLPIPLVQVKDCNFS--F 244
            G   D+ AR + L N P       G  +   A +        LP   V+  DC+FS   
Sbjct: 165 IGNCLDRFARIIGLSNAPS-----PGYNIMQEAKK--GKRFIELPY-TVKGMDCSFSGLL 216

Query: 245 NGLKTSVLYHLRKKEKEHKVVADALIPEISNLCCAALIATTKHLVHRTQRAMQFCSINNL 304
           +G++ +    L  K        D        LC +        LV  T+RAM     +++
Sbjct: 217 SGVEAAATELLDPKNPSSVTKQD--------LCYSLQETGFAMLVEITERAMAHIRADSV 268

Query: 305 IPENNKRLVVSGGVACNNYIFNALKAASVDYGYNVYRPSMKLCTDNGIMIAWNGL 359
           +        + GGV CN  +   +   S D G +V+    + C DNGIMIA  GL
Sbjct: 269 L--------IVGGVGCNERLQQMMAEMSSDRGADVFSTDERFCIDNGIMIAQAGL 315


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 269

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 2  PGILCRSAMNTFQKLRPLTNSKCNSTLIFGIE 33
          P  L R  M      RPL N +CNS L + +E
Sbjct: 14 PADLKRLLMKRNSFRRPLLNMRCNSVLQYSLE 45


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,297
Number of Sequences: 5004
Number of extensions: 68306
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 3
length of query: 408
length of database: 2,362,478
effective HSP length: 74
effective length of query: 334
effective length of database: 1,992,182
effective search space: 665388788
effective search space used: 665388788
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)