Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000349-TA|BGIBMGA000349-PA|IPR000905|Peptidase M22,
glycoprotease, IPR009180|Peptidase M22, O-sialoglycoprotein
endopeptidase
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14250| Best HMM Match : No HMM Matches (HMM E-Value=.)             107   2e-23
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   2e-08
SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)          31   2.2  
SB_20988| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=4.6)            30   3.0  
SB_44197| Best HMM Match : Flagellin_IN (HMM E-Value=7.7)              29   5.2  
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)             29   6.8  
SB_30335| Best HMM Match : BESS (HMM E-Value=1.9)                      29   6.8  
SB_25112| Best HMM Match : HEAT (HMM E-Value=3.09999e-40)              29   9.0  

>SB_14250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score =  107 bits (256), Expect = 2e-23
 Identities = 81/244 (33%), Positives = 115/244 (47%), Gaps = 21/244 (8%)

Query: 116 VGMKYAKHLARVNAKPIIPIHHMEAHALTVRMEHNVN-FPYLVLLISGGHCLLAVVQNIN 174
           VG    + LA     P I +HHME H L   +E N   FP++ LL+SGGH  L  V  I 
Sbjct: 2   VGASTGQALAMAWGVPAIGVHHMEGHLLAPMLEDNPPAFPFVALLVSGGHTQLVKVTAIG 61

Query: 175 KFLLLGKSIDMAPGELFDKIARRMKLRNVPELSTMCGGQAVETAALRATNPEMFNLPIPL 234
            + LLG+S+D A GE FDK A+ + L + P      GG  +   A++      F  P P+
Sbjct: 62  AYELLGESLDDAAGEAFDKAAKMLGL-DYP------GGPLIAKLAMQGDRTR-FRFPRPM 113

Query: 235 VQVKDCNFSFNGLKTSVLYHLRKKEKEHKVVADALIPEISNLCCAALIATTKHLVHRTQR 294
                 +FSF+GLKT  L        EH V         +++  A   A    LV + +R
Sbjct: 114 TDRPGLDFSFSGLKTFTL----NTVYEHTVDGSVDAQTKADIAAAFEEAVVDTLVIKCRR 169

Query: 295 AMQFCSINNLIPENNKRLVVSGGVACNNYIFNALKAASVDYGYNVYRPSMKLCTDNGIMI 354
           A+Q   +        K+LV++GGV+ N  +   L A        ++    + CTDNG MI
Sbjct: 170 AIQQTGL--------KQLVIAGGVSANQCLREKLGAMVEKERAGLFYARNRFCTDNGAMI 221

Query: 355 AWNG 358
           A+ G
Sbjct: 222 AYAG 225


>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1837

 Score = 57.6 bits (133), Expect = 2e-08
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 4/129 (3%)

Query: 77  HRKYIEPTVTETLLKANLLMKDISAIAVTVKPGLPLSLAVGMKYAKHLARVNAKPIIPIH 136
           H+++    +   L +A +  +DI  I  T  PG+   L      A+ +A++  K II ++
Sbjct: 9   HQEHAIDILRRALDEAQIRPQDIDCICYTKGPGMGAPLVAVAVVARTVAQLWKKLIIGVN 68

Query: 137 HMEAHALTVRMEHNVNFPYLVLLISGGHC-LLAVVQNINKFLLLGKSIDMAPGELFDKIA 195
           H   H    R+    N P  VL +SGG+  ++A +Q   ++ + G++ID+A G   D+ A
Sbjct: 69  HCIGHIEMGRLITGANNP-TVLYVSGGNTQVIAYLQ--KRYRIFGETIDIAVGNCLDRFA 125

Query: 196 RRMKLRNVP 204
           R +KL N P
Sbjct: 126 RVLKLSNDP 134



 Score = 31.5 bits (68), Expect = 1.3
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 336 GYNVYRPSMKLCTDNGIMIAWNGLEKWR 363
           GYN+ + + K C DNG MIA  G E ++
Sbjct: 137 GYNIEQMAKKFCIDNGAMIAQAGWEMFQ 164


>SB_48726| Best HMM Match : E1-E2_ATPase (HMM E-Value=7.7e-07)
          Length = 592

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 94  LLMKDISAIAVTVKPGLPLSLAVGMKYA 121
           ++ K +  I + V P LP ++A+GM YA
Sbjct: 211 IIEKSLDVITIAVPPALPAAMAIGMVYA 238


>SB_20988| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=4.6)
          Length = 229

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 250 SVLYHLRKKEKEHKVVADALIPEISNLCCAALIATTKHLVHRT 292
           +VL H++ ++K HKV +D   PE   +   + +++   +V RT
Sbjct: 178 NVLLHIKGRKKSHKVFSDVNKPEKIEIAWISRVSSLSSMVGRT 220


>SB_44197| Best HMM Match : Flagellin_IN (HMM E-Value=7.7)
          Length = 338

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 259 EKEHKVVADALIPEISNLCCAALIATTKHLVHRTQRAMQFCSINNLIPENNKRLVVSGGV 318
           E+EH++   A +P I+ L   A   T + +V    RA        L P   K ++VS G+
Sbjct: 42  EREHQITTIAFLPPIATL--PAGHHTAESIVETINRAESKILTAKLDPLTGKIVLVSNGI 99

Query: 319 ACNNYIFNAL 328
              N +  AL
Sbjct: 100 VFLNAVLCAL 109


>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 243 SFNGLKTSVLYHLRKKEKEHKVVADALIPEISNLCCAALIATTKHLVHRTQRAMQFCSIN 302
           SF+ ++  + Y LR + KE  V+   ++P ISN    A+  +++    R   A + C   
Sbjct: 533 SFSAMRRLISY-LRSRMKEDHVIKSDVLPPISNPKAGAM-KSSRGCGPRPHPAFE-CFDC 589

Query: 303 NLIPENNKRLVVSG 316
           N +   +KR+ V+G
Sbjct: 590 NFVKSCDKRIFVAG 603


>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
          Length = 999

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 263 KVVADALIPEISNLCCAALIATTKH 287
           ++  D ++PE++N C   L+A  KH
Sbjct: 137 EIYVDPIMPEVTNFCLPGLLANLKH 161


>SB_30335| Best HMM Match : BESS (HMM E-Value=1.9)
          Length = 386

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)

Query: 346 LCTDNGIMIAWNGLEKWRKNLD-IMTNF 372
           +CT  G+M A+N ++++ +N D IM+ F
Sbjct: 273 VCTRTGVMAAFNSMDEFERNFDEIMSRF 300


>SB_25112| Best HMM Match : HEAT (HMM E-Value=3.09999e-40)
          Length = 1002

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 194 IARRMKLRNVPELSTMCG---GQAVETAALRATNPEMFNLPIPLVQVKDCNFSFNGLKTS 250
           I R   L   PEL        G+ +   +  A  P + N+  PL+++    FS+N +K +
Sbjct: 667 IFREGILNGTPELKEQAAYGLGEVISLTSAAALRPSVVNITGPLIRILGDRFSWN-VKVA 725

Query: 251 VLYHL 255
           VL  L
Sbjct: 726 VLQTL 730


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,315,067
Number of Sequences: 59808
Number of extensions: 467925
Number of successful extensions: 964
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 10
length of query: 408
length of database: 16,821,457
effective HSP length: 84
effective length of query: 324
effective length of database: 11,797,585
effective search space: 3822417540
effective search space used: 3822417540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)