GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000349-TA|BGIBMGA000349-PA|IPR000905|Peptidase M22,
glycoprotease, IPR009180|Peptidase M22, O-sialoglycoprotein
endopeptidase
         (408 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    32   0.008
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   6.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.2  

>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 32.3 bits (70), Expect = 0.008
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 286 KHLVHRTQRAMQFCSINNLIPENNKRLVVSGGVACNNYI-FNALKAASVDYGYNVYRPSM 344
           +H++  TQ+A++  ++ N  PE N    +   +  N      A   A +  G +    ++
Sbjct: 20  QHVLEETQQALELINLENFFPEENVVEELLSPLTLNRITHILANSPAIIILGQDSKAKAI 79

Query: 345 KLCT--DNGIMIAWNGLEKWRKNLDIMTNFNTLDLEATSQLGESL 387
            + T   N I+   NGL +W +     TN  +L L+   +L E+L
Sbjct: 80  VVNTLISNDILPVCNGLWRWIRLTYGQTNHISLTLDLEYELVENL 124


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 162 GGHCLLAVVQNINKFLLLGKSIDMAPG-ELFDKIARRMKL 200
           GG  + A++ +I   LLLG+++D     E FD +    KL
Sbjct: 8   GGGMVSAILSSIVLLLLLGRTVDAQRSLEFFDLLPEDPKL 47


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 350 NGIMIAWNGLEKWRKNLDIMTNFNTLDLEATSQLGESL 387
           N I+   NGL +W +     TN  +L L+   +L E+L
Sbjct: 49  NDILPVCNGLWRWIRLTYGQTNHISLTLDLEYELVENL 86


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 238 KDCNFSFNGLKTSV 251
           +DCN SFN L T V
Sbjct: 531 EDCNKSFNDLLTQV 544


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,282
Number of Sequences: 429
Number of extensions: 4342
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 408
length of database: 140,377
effective HSP length: 59
effective length of query: 349
effective length of database: 115,066
effective search space: 40158034
effective search space used: 40158034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)