Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000348-TA|BGIBMGA000348-PA|IPR000618|Insect cuticle
protein
         (275 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.73 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.0  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 84  SSSDVTITPAPPTFSHPSSTPRVFVSPNSIDSST 117
           +S+ V   P   T S PS  PR+  +P+S  SS+
Sbjct: 495 ASTAVIHEPVVETNSSPSPNPRIASAPSSSTSSS 528


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 142 EPPNTNSLDDGYYASDSQRYDVFNPNSYRH 171
           EP   +SL + Y  S+   Y+ +N N+Y +
Sbjct: 311 EPKIISSLSNNYKYSNYNNYNNYNNNNYNN 340


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 145 NTNSLDDGYYASDSQRYDVFNPNSYRHADDWL 176
           NTN   D Y   D  + D  NP   ++ ++WL
Sbjct: 141 NTNKYKDYYIWVDPVKDDKGNPIKDKYPNNWL 172


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 89  TITPAPPTFSHPSSTPRVFVSPNSIDSSTAYDYRPTVTSVTDRD 132
           TIT    T +  ++T     +PN+  +++A    P V  V D++
Sbjct: 657 TITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVDDKE 700


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 231 YVDPFGIRRVIYYNTAPGDGFQIRKNN-RYVGHD 263
           Y  P     + Y NTAP    Q  +NN +Y G +
Sbjct: 264 YYSPLASHGLYYVNTAPFMKSQFGENNVQYQGSE 297


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 116  STAYDYRPTVTSVTDRDATTPNPYAYEP 143
            ST++D +      TD +  TP   A EP
Sbjct: 1136 STSFDSKVMTRPDTDSENWTPKMMAVEP 1163


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,348
Number of Sequences: 429
Number of extensions: 5757
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 6
length of query: 275
length of database: 140,377
effective HSP length: 57
effective length of query: 218
effective length of database: 115,924
effective search space: 25271432
effective search space used: 25271432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)