GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000347-TA|BGIBMGA000347-PA|IPR000618|Insect cuticle
protein
         (518 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    37   4e-04
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.87 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.1  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   1.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   3.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   8.1  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 37.1 bits (82), Expect = 4e-04
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 4/106 (3%)

Query: 280 SSDSNIFNNQNSKTPNSFNQGSDEQRGTR--DEQTGSNAGGTANERINSINAGQTTTGAV 337
           ++D+   +NQN+   N+ NQ +++Q G R  D +   N      +  N  N  +      
Sbjct: 431 NADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQ 490

Query: 338 AGSRSPKLYNVKPDQSSNGLSPREQSRFGQASGNKIRPENGQSNNE 383
            G+R     N + D   NG    +  R G    +    +N  + N+
Sbjct: 491 NGNRQNG--NKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRND 534



 Score = 35.5 bits (78), Expect = 0.001
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 117 NGGIGGTKSDVQNNQVPTYNVKQNNADSQ--YPQQGDFKNFPGQQLNPQNVGNQQTPDVQ 174
           N   G   +D QN      N    NAD+Q    Q G+ +N   Q  N QN GN+Q  + Q
Sbjct: 424 NQNAGNQNADNQN--ADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQN-GNRQNDNKQ 480

Query: 175 NSRTNQNNKQ 184
           N     +NKQ
Sbjct: 481 NGNRQNDNKQ 490



 Score = 30.7 bits (66), Expect = 0.030
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 128 QNNQVPTYNVKQNNADSQYPQQGDFKNFPGQQLNPQNVGNQQTPDVQNSRTNQNNKQ 184
           QN+     N +  N  +   Q G+ +N   Q  N QN GN+Q  + QN     +NK+
Sbjct: 460 QNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQN-GNKQNDNKQNGNRQNDNKR 515



 Score = 30.3 bits (65), Expect = 0.040
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 117 NGGIGGTKSDVQNNQVPTYNVKQNNADSQYPQQGDFKNFPGQQLNPQNVGNQQTPDVQNS 176
           N       +D QN      N + +N  +   Q G+ +N   Q  N QN  N+Q  + QN 
Sbjct: 439 NQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQN-DNKQNGNRQNG 497

Query: 177 RTNQNNKQ 184
               +NKQ
Sbjct: 498 NKQNDNKQ 505



 Score = 29.5 bits (63), Expect = 0.070
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 7/108 (6%)

Query: 251 QNSFGAPQGNQNGFGAPHAAAEGLGTSKGSSDSNIFNNQNSKTPNSFNQGSDEQRGTR-- 308
           QN+      NQN   A +  A+    +K + +    N QN    N   Q  ++Q G R  
Sbjct: 430 QNADNQNADNQN---ANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQN 486

Query: 309 -DEQTGSNAGGTANERINSINAGQTTTGAVAGSRSPKLYNVKPDQSSN 355
            ++Q G+   G   +  N  N  +       G+R     N + D + N
Sbjct: 487 DNKQNGNRQNGN-KQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRN 533



 Score = 29.1 bits (62), Expect = 0.093
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 9/105 (8%)

Query: 286 FNNQNSKTPNSFNQGSDEQRGTRDEQTGSNA----GGTAN---ERINSINAGQTTTGAVA 338
           ++NQN+   N+ NQ +D Q          NA    G   N   +  N  N  +       
Sbjct: 422 YHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQN 481

Query: 339 GSRSPKLYNVKPDQSSNGLSPREQSRFGQASGNKIRPENGQSNNE 383
           G+R     N +     NG    +  + G    +  R  N Q++N+
Sbjct: 482 GNRQND--NKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQ 524



 Score = 29.1 bits (62), Expect = 0.093
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 128 QNNQVPTYNVKQNNADSQYPQQGDFKNFPGQQLNPQNVGNQQTPDVQNSRTNQNNKQTQ 186
           QN      N +  N  +   Q G+ +N   Q  N QN GN+Q  + +N     +N+  Q
Sbjct: 470 QNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQN-GNRQNDNKRNGNRQNDNQNNQ 527



 Score = 26.6 bits (56), Expect = 0.50
 Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 148 QQGDFKNFPGQQLNPQNVGNQQTPDVQNSRTNQNNKQTQXXXXXXXXXXXXXXXQNGFKQ 207
           Q  D +N   Q  N QN  NQ   + QN     +N+Q                 QNG +Q
Sbjct: 430 QNADNQNADNQNANNQNADNQNA-NKQNGNRQNDNRQND---NKQNGNRQNDNKQNGNRQ 485

Query: 208 TPVQALSTIANQGGDNPEYPTGLRNSFDSPQG-QQNEFGAPQRQQN 252
              +      N    N     G R + +   G +QN+    Q   N
Sbjct: 486 NDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNN 531



 Score = 25.8 bits (54), Expect = 0.87
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query: 121 GGTKSDVQNNQVPTYNVKQNNADSQYPQQGDFKNFPGQQLNPQNVGNQQTPDVQNSRTNQ 180
           G  ++D + N     + KQN       +Q D K    +Q + +  GN+Q  +  N   N 
Sbjct: 472 GNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNN 531

Query: 181 NN 182
            N
Sbjct: 532 RN 533



 Score = 24.6 bits (51), Expect = 2.0
 Identities = 15/64 (23%), Positives = 26/64 (40%)

Query: 121 GGTKSDVQNNQVPTYNVKQNNADSQYPQQGDFKNFPGQQLNPQNVGNQQTPDVQNSRTNQ 180
           G  ++D + N       +QN+      +Q D K    +Q   +   N+Q  + QN     
Sbjct: 457 GNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRN 516

Query: 181 NNKQ 184
            N+Q
Sbjct: 517 GNRQ 520


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.87
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 90   PPAKSCSHCSLPTTSTVAPASAKP 113
            PPA SC   S+P    + P+S +P
Sbjct: 1269 PPAYSCGTVSVPQQQQLPPSSPQP 1292


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 25/113 (22%), Positives = 36/113 (31%), Gaps = 4/113 (3%)

Query: 147  PQQGDFKNFPGQQLNPQNVGNQQTPDVQNSRTNQNNKQTQXXXXXXXXXXXXXXXQNGFK 206
            PQQ   +    QQ   Q       PD+ N      +K++                Q   +
Sbjct: 1447 PQQPQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSACDSKLIVDHSSQKTQQQQPQ 1506

Query: 207  QTPVQALSTIANQGGDNPEYPTGLRNSFDSPQGQQNEFGAPQRQQNSFGAPQG 259
            Q   Q       Q    P+     +      Q QQ +   PQ+QQ  +GA  G
Sbjct: 1507 QQQQQQQQQQPQQQSQQPQQ----QQPQPQQQQQQQQQQQPQQQQKEYGAVSG 1555



 Score = 24.2 bits (50), Expect = 2.6
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 231  RNSFDSPQGQQNEFGAPQRQQNSFGAPQGNQNGFGAPHAAAEGLG-TSKGSSDSNIFNNQ 289
            RN+    Q QQ +    Q+QQ      Q  Q+          G+  TS G+S+S     Q
Sbjct: 1203 RNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQAREREGVGAGIAETSAGTSNSR-GAAQ 1261

Query: 290  NSKTPNSFNQG 300
             SK P   ++G
Sbjct: 1262 MSKVPRDVSEG 1272


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 446 VKQGYYYVTGRNGIRTRIDYIADDKGFR 473
           V QG    T  +G +  I Y+AD+ GF+
Sbjct: 70  VSQGSDSYTAPDGQQVSITYVADENGFQ 97


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 158 QQLNPQNVGNQQTPDVQNSRTNQNNKQ 184
           Q  N QN  NQ   + +N++ N NN++
Sbjct: 419 QNDNIQNTNNQNDNNQKNNKKNANNQK 445



 Score = 22.6 bits (46), Expect = 8.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 287 NNQNSKTPNSFNQGSDEQRGTR 308
           NNQN    N+ NQ  + Q+  +
Sbjct: 417 NNQNDNIQNTNNQNDNNQKNNK 438


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 379 QSNNEKPTLTYAQIQIVDKNTD 400
           + N +KP LTY Q Q V  + D
Sbjct: 158 ERNGDKPPLTYHQFQTVVASMD 179


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 310 EQTGSNAGGTANERINSINAGQTTTGAVAGSRSPKLYNVKPDQSS 354
           E TG N+G  A    +S ++G   +     S S   +  + + +S
Sbjct: 246 ELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSNEHEAESEHTS 290


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.127    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,246
Number of Sequences: 429
Number of extensions: 8208
Number of successful extensions: 43
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 25
length of query: 518
length of database: 140,377
effective HSP length: 61
effective length of query: 457
effective length of database: 114,208
effective search space: 52193056
effective search space used: 52193056
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 46 (22.6 bits)