Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000346-TA|BGIBMGA000346-PA|IPR000618|Insect cuticle
protein
         (104 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    29   0.20 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    24   4.3  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    24   5.6  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    24   5.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   5.6  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    23   7.4  
SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|ch...    23   9.8  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    23   9.8  
SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch...    23   9.8  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    23   9.8  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    23   9.8  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    23   9.8  

>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 28.7 bits (61), Expect = 0.20
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 29  LRFDSNVEPDGYSF-----AYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKH 83
           L  D  +  +GY F     +  T   +S  ++GK    +       V     +++  G +
Sbjct: 20  LSSDDEIAEEGYDFEELEASASTITSSSDLKDGKNAKDEKGTVEFKVAAHGDFISSKGDN 79

Query: 84  YTVTFTAGPNGFQPKTSLGQ 103
           Y  +    P  FQP T LG+
Sbjct: 80  YVPSGKMRPADFQPLTVLGR 99


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 22   NPQDVQILRFDSNVEPDGYSFAYE 45
            NP  V +++ D  + P+GY++  E
Sbjct: 995  NPNIVNLIKNDVYISPNGYAYVKE 1018


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 45  ETSDGTSRQEEGKLDN--PQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNGFQPKTS 100
           E SD  ++ E    D+  P+ E AAL V+  Y Y+    +      ++GP     K S
Sbjct: 47  EISDDVTKIEVMYEDHSFPERELAALVVSKVYYYLGEYDEALLFALSSGPKFLHDKNS 104


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 44  YETSDGTSRQEEGKLDNPQSENAALTVTGQYAYV 77
           +ET +  +  E   +DN   E +    T +Y YV
Sbjct: 128 HETPNTENNNEVKSIDNVDQEGSVYPTTKEYPYV 161


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 34   NVEPDGYSFAYE 45
            NVEP G+SF Y+
Sbjct: 993  NVEPTGFSFVYD 1004


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 58  LDNPQSENAALTVTGQYA 75
           LD P +++A + + GQYA
Sbjct: 439 LDEPDAKSAVIWILGQYA 456


>SPCC1682.13 |||SWIRM domain protein|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 272

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 26 VQILRFDSNVEPDGYSFAYET 46
          +QIL+   N+ PDG SF   T
Sbjct: 1  MQILKDQENLNPDGGSFVLIT 21


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 30  RFDSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSEN 65
           R  S +E        E  +G   +EE ++ N +SEN
Sbjct: 344 RTTSRIETQEEEIKEEEMEGEEEEEEEEVPNYESEN 379


>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 166

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 58 LDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAG 91
          +D   SE  +  V   Y  + PD   +TVT TAG
Sbjct: 43 VDCSSSEVTSQPVVTVYNVLKPDTVTFTVTETAG 76


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 447

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 33 SNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVAPDG 81
          S   P   SF   +++   R    K D PQ   A  TVT Q + +  DG
Sbjct: 40 SRKNPSNVSFW--SNEPIIRHSSVKTDRPQFHRADSTVTEQSSEILFDG 86


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 932

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 31 FDSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSEN 65
          F  ++ PDG   A    DGT R    +  N ++EN
Sbjct: 22 FSIHIHPDGSRIATGGLDGTIRIWSTEAINRENEN 56


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 7   VACVLVALCSGAPQQNPQDVQ 27
           V+C + +  S  PQQN QD Q
Sbjct: 206 VSCSIESPISHTPQQNQQDEQ 226


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.130    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,427
Number of Sequences: 5004
Number of extensions: 19712
Number of successful extensions: 30
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 12
length of query: 104
length of database: 2,362,478
effective HSP length: 63
effective length of query: 41
effective length of database: 2,047,226
effective search space: 83936266
effective search space used: 83936266
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)