Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000346-TA|BGIBMGA000346-PA|IPR000618|Insect cuticle
protein
         (104 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.2  
SB_37643| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_226| Best HMM Match : Tektin (HMM E-Value=0)                        27   2.9  
SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)                      27   3.8  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_25462| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                27   3.8  
SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)                   26   5.0  
SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)              26   5.0  
SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    26   6.7  
SB_29056| Best HMM Match : DUF399 (HMM E-Value=0.24)                   26   6.7  
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)                      26   6.7  
SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     25   8.8  
SB_33952| Best HMM Match : Lectin_C (HMM E-Value=3.1)                  25   8.8  
SB_52864| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  
SB_50580| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  
SB_18754| Best HMM Match : GYR (HMM E-Value=1.5)                       25   8.8  
SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  

>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 39  GYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKHY 84
           G+S + + S   +  ++G   NPQ EN   +  G Y+  + D  +Y
Sbjct: 276 GWSGSNQRSGNVASNQQGGDTNPQQENYGNSNYGNYSNFSSDNGNY 321


>SB_37643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)

Query: 38 DGYSFAYETSDGTSRQEE 55
          DG S  YETSDG SR+ E
Sbjct: 75 DGVSKRYETSDGVSRRYE 92



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 36  EPDGYSFAYETSDGTSRQEE 55
           E  G S  YETSDG SR+ E
Sbjct: 189 ETSGVSERYETSDGVSRRYE 208



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/16 (68%), Positives = 12/16 (75%)

Query: 38  DGYSFAYETSDGTSRQ 53
           DG S  YETSDG SR+
Sbjct: 114 DGVSKRYETSDGVSRR 129



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 38  DGYSFAYETSDGTSRQEE 55
           DG S  YETSDG S++ E
Sbjct: 222 DGVSERYETSDGVSKRYE 239


>SB_226| Best HMM Match : Tektin (HMM E-Value=0)
          Length = 534

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 75  AYVAPDGKHYTVTFTAGPNGFQPKTS 100
           AY+ P G  Y  T+TA   G +P T+
Sbjct: 21  AYLRPTGGPYETTYTASFQGIRPHTT 46


>SB_47009| Best HMM Match : WSC (HMM E-Value=0.16)
          Length = 852

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 60  NPQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNGFQPKTSLGQK 104
           +P+++ A  T   Q A   P  +  T+T+   P    PKT L  K
Sbjct: 2   SPKTQPATKTPKRQQASKTPKTQPATMTYKTQPATMTPKTQLASK 46


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 18   APQQNPQDVQILRFDSNVEPDGYSFAYETSD-GTSRQEEGKL 58
            AP Q  QDV ++   + VE     + Y T +    RQ  GKL
Sbjct: 1873 APPQPEQDVIVMHAQTQVESTPIEYDYNTDEYEIKRQSVGKL 1914


>SB_25462| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 446

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)

Query: 9  CVLVALCSGAPQQNPQDVQILRFDSNVEPDGYSFA------YETSDGTSRQEEGKLDNPQ 62
          C+ V +     Q N +DV    FD   + DG SF+       +++DG+      +    +
Sbjct: 20 CLSVPVLLSDVQNNAEDVNSEDFDPFEQEDGASFSNVWAVQLDSNDGSLADAIARAHGFK 79

Query: 63 SENAALTVTGQYAYV 77
          +     T+TG Y +V
Sbjct: 80 NLGGIGTLTGHYEFV 94


>SB_10735| Best HMM Match : rve (HMM E-Value=2.2e-17)
          Length = 1013

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)

Query: 45  ETSDGTSRQEEGKLDNP-QSENAAL--TVTGQYAYVAPDGKHYTVTFTAGPNGFQPKTSL 101
           ET  G++   E KL+ P  +E AA    V+ ++A  A D       F  GP+ F P+T+L
Sbjct: 496 ETEPGSAEASEPKLEKPCLAEFAAWFNCVSDKHADSAGDK-----AFATGPDDFMPETNL 550


>SB_19363| Best HMM Match : Neuromodulin (HMM E-Value=1.4)
          Length = 361

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 22 NPQDVQILRFDSNVEPDGYSFAYETSDGTSRQE 54
          +PQ   +L FD+ V P G S    TS+ T   E
Sbjct: 18 SPQMSPVLNFDNKVAPGGSSSDKGTSESTRNAE 50


>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 11 LVALCSGAPQQNPQDVQ 27
          L  +C GAP  NPQ+++
Sbjct: 75 LETICEGAPSTNPQEIE 91


>SB_29056| Best HMM Match : DUF399 (HMM E-Value=0.24)
          Length = 230

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 9   CVLVALCSGAPQQN--PQDVQILRFDSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENA 66
           CVL  + +   Q +  P  V ++    NV+      AY+  D  + Q+   L+N      
Sbjct: 64  CVLERMVTEQEQNSTHPSSVTLILEMFNVQQQPLLDAYQ-EDQITLQD---LENQYRGTE 119

Query: 67  ALTVTGQYAYVAPDGKHYTVTFTAGPNGFQPKT 99
              +TG Y ++    K+  V   A   GF PK+
Sbjct: 120 GFQITGHYGFLLEAAKNLQVKIVA---GFAPKS 149


>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 530

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 31 FDSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYV 77
          FDS++   G+S  Y        +  G L N    +  +T  G+YAY+
Sbjct: 26 FDSDLSGCGWSQVYGDDFNFRFRRYGTLSNGTGPSDDITGGGKYAYI 72


>SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 717

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 61  PQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNGFQPKTSL 101
           P+S+ A+   +     V PD + + +   AGP G  P  S+
Sbjct: 107 PESDPASDPPSPDIPVVVPDHRPFAIVSHAGPPGLTPVCSV 147


>SB_33952| Best HMM Match : Lectin_C (HMM E-Value=3.1)
          Length = 311

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 58  LDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNGFQPKTSL 101
           ++  Q +  +L +T +   +A +G H    F A P G  P++++
Sbjct: 267 INTEQRQVQSLVLTDEGNQIAENGSHEAWVFDAIPEGGMPQSNI 310


>SB_52864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 31  FDSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTA 90
           +++N +       Y+ +  T R++  K     +     T TG       + KH+ V  T 
Sbjct: 213 YEANTKHFDVQLTYQPNGYTCREDNEKC----TRRTRSTPTGYRQMYEANTKHFDVQLTY 268

Query: 91  GPNGF 95
            PNG+
Sbjct: 269 QPNGY 273


>SB_50580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 20 QQNPQDVQILRFDSNVEP 37
          + NP+D+Q+LR D  + P
Sbjct: 53 EDNPRDLQVLRHDKELHP 70


>SB_18754| Best HMM Match : GYR (HMM E-Value=1.5)
          Length = 454

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 35 VEPDGYSFAYETSDGTSRQEEGK 57
          VEPD YS+ +      S+Q  GK
Sbjct: 28 VEPDSYSYLHAKLQNASQQSTGK 50


>SB_10782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 58  LDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNGFQPKTSL 101
           ++  Q +  +L +T +   +A +G H    F A P G  P++++
Sbjct: 19  INTEQRQVQSLVLTDEGNQIAENGSHEAWVFDAIPEGGMPQSNI 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.130    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,843,494
Number of Sequences: 59808
Number of extensions: 144200
Number of successful extensions: 264
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 27
length of query: 104
length of database: 16,821,457
effective HSP length: 72
effective length of query: 32
effective length of database: 12,515,281
effective search space: 400488992
effective search space used: 400488992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)