GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000346-TA|BGIBMGA000346-PA|IPR000618|Insect cuticle
protein
         (104 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   0.48 
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    21   2.6  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   3.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   3.4  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    20   4.5  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    20   4.5  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    19   7.9  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    19   7.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 0.48
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 19  PQQNPQDVQILRFDSNVEPDGYSFAYETSDGTSRQEEGKLDNP 61
           PQ    DV  +  DS+V P G  F YE        +    DNP
Sbjct: 651 PQNPDNDVHSIVDDSDVGPSGDCF-YENKFYRQEAQWTSSDNP 692


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 2   LKYVTVACVLVALCSGAPQQNPQDVQILRFDSNVEPDGYSFAY 44
           LKY  +  + V    G    NP+DV+++  D+      + + +
Sbjct: 64  LKYYPIYKLDVCGTGGVNLLNPEDVELVLTDTKQNTKSFIYHF 106


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 57 KLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNGF 95
          K  +P S +  L +  +       GKHY +    G  GF
Sbjct: 23 KPQSPSSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGF 61


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 3.4
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 57 KLDNPQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNGF 95
          K  +P S +  L +  +       GKHY +    G  GF
Sbjct: 23 KPQSPSSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGF 61


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 81  GKHYTVTFTAGPNGFQPKT 99
           GKHY V    G  GF  +T
Sbjct: 95  GKHYGVYSCEGCKGFFKRT 113


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 2   LKYVTVACVLVALCSGAPQQNPQDVQILRFDSNVEPDGYSFAY 44
           LKY  +  + V    G    NP+DV+++  D+      + + +
Sbjct: 64  LKYYPIYKLDVCGNGGVNLLNPEDVELVLTDTKQNTKSFIYHF 106


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 19  PQQNPQDVQILRFDS 33
           P++ PQ  ++LRF S
Sbjct: 254 PEEAPQRKELLRFAS 268


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)

Query: 20  QQNPQDVQILRFDSNVEPDG 39
           ++ P D Q++R D+ +  +G
Sbjct: 94  EEEPPDPQLMRLDNMLIAEG 113


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.130    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,037
Number of Sequences: 317
Number of extensions: 1031
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 104
length of database: 114,650
effective HSP length: 49
effective length of query: 55
effective length of database: 99,117
effective search space:  5451435
effective search space used:  5451435
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)