GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000346-TA|BGIBMGA000346-PA|IPR000618|Insect cuticle
protein
         (104 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    50   6e-09
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   2.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   2.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   5.4  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               19   9.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   9.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   9.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             19   9.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 50.0 bits (114), Expect = 6e-09
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 10/102 (9%)

Query: 8   ACVLVALCSGAPQQNPQ--------DVQILRFDSNVEPDG-YSFAYETSDGTSRQEEGKL 58
           A V V LC+ A    PQ        D  I      V  DG Y   +ETS+G S QE G+ 
Sbjct: 1   ALVAVVLCTTATLAAPQRPSGGADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQP 60

Query: 59  DNPQSENAALTVTGQYAYVAPDGKHYTVTFTAGPNGFQPKTS 100
               +E   ++  G  +Y APDG+  ++T+ A  NGFQ + S
Sbjct: 61  KQVDNETPVVS-QGSDSYTAPDGQQVSITYVADENGFQVQGS 101


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 50  TSRQEEGKLDNPQSENAALTVTGQYAYVAPD---GKHYTVTFTAGPNGFQPKT 99
           TS   + K   P   N  L+ +     +  D   GKHY V    G  GF  +T
Sbjct: 85  TSPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 137


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 50  TSRQEEGKLDNPQSENAALTVTGQYAYVAPD---GKHYTVTFTAGPNGFQPKT 99
           TS   + K   P   N  L+ +     +  D   GKHY V    G  GF  +T
Sbjct: 85  TSPSGQNKAVAPYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRT 137


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 38  DGYSFAYETSDGTSRQEEGKLD-NPQS 63
           DG+S     SDG   + EG L   PQ+
Sbjct: 376 DGWSARGLVSDGNEAEVEGTLSVQPQA 402


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 1  MLKYVTVACVLVALCSGAPQQNPQDVQILRFDSN 34
          ++ Y+ V C  + LC      N  D+  L  D +
Sbjct: 13 IVSYMMVRCDDITLCLKQENLNLDDIDSLLEDES 46


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 6   TVACVLVALCSGAPQQNPQDVQIL 29
           TV  + V   S AP Q P DV +L
Sbjct: 163 TVYVMSVVGLSKAPAQIPVDVLVL 186


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
          protein.
          Length = 1124

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 15 CSGAPQQNPQDVQILRFDSNVEPDGYSFAYETSDGTSRQ 53
          CS +  Q      I R  +  E  GY     ++ G+S +
Sbjct: 21 CSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNE 59


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 10/39 (25%), Positives = 16/39 (41%)

Query: 15 CSGAPQQNPQDVQILRFDSNVEPDGYSFAYETSDGTSRQ 53
          CS +  Q      I R  +  E  GY     ++ G+S +
Sbjct: 21 CSNSQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNE 59


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.130    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,623
Number of Sequences: 429
Number of extensions: 1236
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 104
length of database: 140,377
effective HSP length: 49
effective length of query: 55
effective length of database: 119,356
effective search space:  6564580
effective search space used:  6564580
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)