GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000346-TA|BGIBMGA000346-PA|IPR000618|Insect cuticle
protein
         (104 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10540.1 68418.m01220 peptidase M3 family protein / thimet ol...    30   0.26 
At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) / flav...    29   0.59 
At5g47690.1 68418.m05887 expressed protein                             27   1.8  
At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)...    27   1.8  
At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to ...    26   5.5  
At2g28890.1 68415.m03511 protein phosphatase 2C family protein /...    26   5.5  
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr...    25   9.6  
At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati...    25   9.6  

>At5g10540.1 68418.m01220 peptidase M3 family protein / thimet
           oligopeptidase family protein similar to SP|P27237
           Oligopeptidase A (EC 3.4.24.70) {Salmonella
           typhimurium}; contains Pfam profile PF01432: Peptidase
           family M3
          Length = 701

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 18/80 (22%), Positives = 33/80 (41%)

Query: 13  ALCSGAPQQNPQDVQILRFDSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTG 72
           A+ SG   ++ +  +  + +  +E   + F+    D T + E+   D  + E    +  G
Sbjct: 143 AVLSGIALEDDKREEFNKIEQELEKLSHKFSENVLDATKKFEKLITDKKEIEGLPPSALG 202

Query: 73  QYAYVAPDGKHYTVTFTAGP 92
            +A  A    H T T   GP
Sbjct: 203 LFAQAAVSKGHETATADTGP 222


>At4g08920.1 68417.m01469 cryptochrome 1 apoprotein (CRY1) /
           flavin-type blue-light photoreceptor (HY4) contains Pfam
           PF03441: FAD binding domain of DNA photolyase; member of
           Pfam PF00875: deoxyribodipyrimidine photolyase
           superfamily; 99% identical to Cryptochrome 1 apoprotein
           (Blue light photoreceptor) (flavin-type blue-light
           photoreceptor) (SP:Q43125) [Arabidopsis thaliana]
          Length = 681

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 32  DSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTGQY 74
           D+++E D   + Y T      +E  ++DNPQ E       G+Y
Sbjct: 390 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 432


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/43 (25%), Positives = 24/43 (55%)

Query: 24   QDVQILRFDSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENA 66
            +D+Q  + +S+ + +G    ++ SD   +QE  +++    ENA
Sbjct: 1585 EDLQEAKTESSGDAEGKEAEHDDSDTEGKQENNEMEREAEENA 1627


>At4g21380.1 68417.m03089 S-locus protein kinase, putative (ARK3)
           identical to PIR|T05180|T05180 S-receptor kinase ARK3
           precursor - [Arabidopsis thaliana]
          Length = 850

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 16  SGAPQQNPQDVQILRFDSNVEPDGYSFAYETSDGTSR 52
           SG P+  P +  +  F ++ E   YSF    SD  SR
Sbjct: 228 SGVPEMQPFEYMVFNFTTSKEEVTYSFRITKSDVYSR 264


>At5g63840.1 68418.m08014 alpha-glucosidase, putative similar to
           alpha-glucosidase GI:2648032 from [Solanum tuberosum]
          Length = 921

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 39  GYSFAYETSDGTSRQEEGKLDNP 61
           GY F   TSDG   +EEGK D P
Sbjct: 546 GYYFHMATSDGLVMREEGK-DRP 567


>At2g28890.1 68415.m03511 protein phosphatase 2C family protein /
          PP2C family protein similar to protein phosphatase-2c
          (GI:3608412) [Mesembryanthemum crystallinum]; contains
          Pfam PF00481 : Protein phosphatase 2C domain
          Length = 654

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 14 LCSGAPQQNPQDVQILRFDSNVEPDGYSFAYETSDGTSRQEEGKLDNPQSENAALTVTG 72
          L  GA +    ++ IL  D   E  G+SF Y   D T R    K+ + +      T++G
Sbjct: 12 LTGGAGRNKKPELSILEPDPLDEGLGHSFCYVRPDPT-RVSSSKVHSEEETTTFRTISG 69


>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain; contains 2 predicted transmembrane domains
          Length = 988

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 57  KLDNPQSENAALTVTGQYAYVAPD 80
           KLD  ++ + +  V G Y Y+AP+
Sbjct: 789 KLDEEENTHISTRVAGTYGYMAPE 812


>At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative
           similar to delta-8 sphingolipid desaturase GI:3819708
           from [Brassica napus]
          Length = 449

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)

Query: 73  QYAYVAPDGKHYTVTFT 89
           Q AYV  D  HYTVT T
Sbjct: 154 QSAYVGHDSGHYTVTST 170


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.130    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,116
Number of Sequences: 28952
Number of extensions: 102916
Number of successful extensions: 219
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 8
length of query: 104
length of database: 12,070,560
effective HSP length: 71
effective length of query: 33
effective length of database: 10,014,968
effective search space: 330493944
effective search space used: 330493944
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)