Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000345-TA|BGIBMGA000345-PA|IPR000618|Insect cuticle
protein
         (105 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14130.1 68418.m01653 peroxidase, putative identical to perox...    26   4.3  
At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR...    26   4.3  
At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase (ME...    26   5.7  
At3g15280.1 68416.m01930 expressed protein very low similarity t...    26   5.7  
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil...    25   7.5  
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil...    25   7.5  
At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase, pu...    25   7.5  
At5g58375.1 68418.m07310 expressed protein                             25   9.9  

>At5g14130.1 68418.m01653 peroxidase, putative identical to
           peroxidase ATP20a [Arabidopsis thaliana]
           gi|1546694|emb|CAA67338
          Length = 330

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 13  AGVIIAQEQKSTAEILSDNSFVRPDGYDFEFKTSDGVSRKEEAGLITVGENQGIAVR 69
           A V IA E +   +   DN  +  DG+D   K    V   +  G+++  +   +A R
Sbjct: 81  ASVFIASENEDAEKDADDNKSLAGDGFDTVIKAKTAV-ESQCPGVVSCADILALAAR 136


>At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 992

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 26  EILSDNSFVRPDGYD-FEFKTSDGVSRKEEAGL-ITVGE-NQGIAVRGSYSYLTPDGQEY 82
           E L ++ ++  D    F+F TS       E G+ I  GE N+ I+  GSY   +    EY
Sbjct: 897 EFLEEDGWLEQDNEVLFKFTTSSEELDIIECGIQILTGETNRNISTYGSYESRSEQVSEY 956

Query: 83  EVTFTAD 89
           E  + +D
Sbjct: 957 EDGYHSD 963


>At4g14140.1 68417.m02181 DNA (cytosine-5-)-methyltransferase
           (METII) nearly identical to cytosine-5 methyltransferase
           (METII) [Arabidopsis thaliana] GI:6523846
          Length = 1519

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 2   VALKLFVLCALAGVIIAQEQKSTAE 26
           V LK FV+C L  VI+ +E +  ++
Sbjct: 924 VGLKAFVVCQLLDVIVLEESRKASK 948


>At3g15280.1 68416.m01930 expressed protein very low similarity to
           cold regulated gene REP14 [Secale cereale] GI:20067233,
           late embryogenesis abundant protein [Picea glauca]
           GI:1161171
          Length = 150

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 44  KTSDGVSRKEEAGLITVGENQGIAVRGSYSYLTPDGQEYEVTFTADD 90
           K  +GV +  +A + T G+N   A+ G++      GQ      T DD
Sbjct: 62  KAKEGVKKATDAAVST-GDNMKDAMDGAWKAAKETGQNISDAVTGDD 107


>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 460

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 42  EFKTSDGVSRKEEAGLITVGENQGI 66
           EF+TS G     EA  +T+G+ Q +
Sbjct: 340 EFETSSGKQSALEASPVTIGDRQAV 364


>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 459

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 42  EFKTSDGVSRKEEAGLITVGENQGI 66
           EF+TS G     EA  +T+G+ Q +
Sbjct: 339 EFETSSGKQSALEASPVTIGDRQAV 363


>At4g08990.1 68417.m01485 DNA (cytosine-5-)-methyltransferase,
           putative strong similarity to cytosine-5
           methyltransferase (METII) [Arabidopsis thaliana]
           GI:6523846; contains Pfam profiles PF01426: BAH domain,
           PF00145: C-5 cytosine-specific DNA methylase
          Length = 1512

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 2   VALKLFVLCALAGVIIAQEQKSTA 25
           V LK FV+C L  VI+ +E +  +
Sbjct: 917 VGLKAFVVCQLLDVIVLEESRKAS 940


>At5g58375.1 68418.m07310 expressed protein
          Length = 85

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 6  LFVLCALAGVIIAQEQKSTAEILSDNSFVRPDGYDFEFKTSDGVSRKEEAGL 57
          +F+   LAG  + Q+  ST++   D+SF      D E    D VS   + G+
Sbjct: 9  IFLSATLAGFFVLQKLNSTSDDPLDDSFT-----DAEHADDDSVSGFSKVGM 55


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.135    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,454
Number of Sequences: 28952
Number of extensions: 96852
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 8
length of query: 105
length of database: 12,070,560
effective HSP length: 71
effective length of query: 34
effective length of database: 10,014,968
effective search space: 340508912
effective search space used: 340508912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)