GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000345-TA|BGIBMGA000345-PA|IPR000618|Insect cuticle
protein
         (105 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    28   0.35 
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    26   1.1  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    24   5.8  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    24   5.8  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    24   5.8  
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce...    23   7.6  

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 13/52 (25%), Positives = 28/52 (53%)

Query: 15  VIIAQEQKSTAEILSDNSFVRPDGYDFEFKTSDGVSRKEEAGLITVGENQGI 66
           +II+  +  T +I    S+     Y+F    +  +++ ++ GL+TVG + G+
Sbjct: 242 IIISGSEDGTVKIWHTLSYSLIKSYNFSLDRAWCIAQNKDNGLVTVGFDNGL 293


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)

Query: 26  EILSDNSFVRPDGYDFEFKTSDGVSRKEEA-GLITVGENQGIAVRGSYSYLTPDGQEYEV 84
           ++ ++ S + PDG D     S G    E A  +  V  N+   V  S S+    G    +
Sbjct: 96  QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHGVTGGAASL 155

Query: 85  TFTADDKGYKPTI 97
           TF A  +GY P +
Sbjct: 156 TFAAARRGYGPAL 168


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 12  LAGVIIAQEQKSTAEILSDNSFV 34
           +A  I+AQ+  ST+E+LS  S V
Sbjct: 251 IAKEIVAQDPSSTSELLSFRSLV 273


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 8   VLCALAGVIIAQEQKSTA----EILSDNSFVRPDGYDFEFK 44
           V  + AG++  +E    A    E+L++N F  P+ YD   K
Sbjct: 551 VYTSFAGILETEENLELASIMVEVLNNNLFTAPELYDLRKK 591


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 62  ENQGIAVRGSYSYLTPDGQEYEVTFTADDKGYKPTI-RII 100
           E+ G  +    ++  PDG +  + F  DD G K  + R+I
Sbjct: 13  EDYGTGLPSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRVI 52


>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 11  ALAGVIIAQEQKSTAEILSDNSFVRPDG 38
           AL    + +E+ S+ EI+S++  V PDG
Sbjct: 110 ALFEQYLGKEEASSIEIVSNDINVHPDG 137


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.135    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 475,433
Number of Sequences: 5004
Number of extensions: 18018
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 6
length of query: 105
length of database: 2,362,478
effective HSP length: 63
effective length of query: 42
effective length of database: 2,047,226
effective search space: 85983492
effective search space used: 85983492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)