GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000345-TA|BGIBMGA000345-PA|IPR000618|Insect cuticle
protein
         (105 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718     28   1.6  
04_03_0626 + 18135267-18136304                                         28   1.6  
03_05_0494 - 24898268-24898576,24898674-24898781,24900428-249005...    27   2.9  
08_02_0851 - 21866088-21866210,21866311-21866413,21866531-218667...    27   3.8  
03_01_0530 + 3971990-3972331,3972415-3972489,3972608-3972661,397...    26   5.0  
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966     26   6.6  
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283...    25   8.8  

>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
          Length = 1412

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 20  EQKSTAEILSDNSFVRP--DGYDFEFKTSDGVSRKEEAGL 57
           E+KST+ + +DN++  P     D EF   DG+  K++  L
Sbjct: 487 EKKSTSNLSTDNAYDHPAERQMDMEFDEFDGLQSKKKRSL 526


>04_03_0626 + 18135267-18136304
          Length = 345

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 45  TSDGVSRKEEAGLITVGENQGIAVRGSYSYLTPDG-QEYEVTFTAD 89
           T + V++  + G  T+ E   +A +G+  YL PD   EY++T   D
Sbjct: 157 TEELVAKVSDFGCSTIDEKTQVAPKGTPGYLDPDYLLEYQLTAKND 202


>03_05_0494 -
           24898268-24898576,24898674-24898781,24900428-24900515,
           24900839-24900975,24901396-24901716
          Length = 320

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 4   LKLFVLCALAGVIIAQEQKSTAEILSDNSFVRPDGYDF--EFKTSDGVSRKEEAGLITVG 61
           L    L ALA V  A+++    +  SD    R DG+ F   F T           L    
Sbjct: 14  LAAVALAALASVAAARDENGVYDPCSDTRIQRGDGFSFGIAFATLGAFYSGGSVQLSPCD 73

Query: 62  ENQGIAVRGSYSYLTPDGQEYEVTFTADDKGYKP 95
               +A  G  +   P   E  +       G+ P
Sbjct: 74  RRLSLASSGQLAVFRPKVDEISLLTINTTTGFNP 107


>08_02_0851 -
          21866088-21866210,21866311-21866413,21866531-21866744,
          21866877-21867075,21867171-21868151
          Length = 539

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 38 GYDFEFKTSDGVSRKEEAGLITVGENQGIAVRGSYSYLTPDGQEYEVTFTADDK 91
          G    F   D +SR+  AGL ++G   G  V      L P+  E+ V F A  +
Sbjct: 48 GETLSFGDVDALSRRVAAGLSSIGVCHGSTV----MLLLPNSVEFAVAFLASSR 97


>03_01_0530 +
           3971990-3972331,3972415-3972489,3972608-3972661,
           3972747-3972825,3972927-3973054,3973178-3973261,
           3973344-3973427,3973518-3973669,3973810-3973960,
           3974675-3974746,3975708-3975749
          Length = 420

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/52 (25%), Positives = 23/52 (44%)

Query: 37  DGYDFEFKTSDGVSRKEEAGLITVGENQGIAVRGSYSYLTPDGQEYEVTFTA 88
           +G   E +T D +         T+G+ QG+ + G   Y+   G +  V F +
Sbjct: 297 EGVLLEAETGDYLGTHRGFWFYTIGQRQGLRLPGGPWYVVEKGVQNNVVFVS 348


>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
          Length = 766

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 49  VSRKEEAGLITVGENQGIAVRGSYSYLTPDG-QEYEVTFTAD 89
           V++  + G  T+ E     V+G+  YL PD   EY++T   D
Sbjct: 584 VAKVSDFGCSTIDEKTQAVVKGTPGYLDPDYLLEYQLTAKND 625


>01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,
            2833799-2833868,2834021-2834108,2834325-2834580,
            2834758-2834883,2835217-2835425
          Length = 1410

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 66   IAVRGSYSYLTPDGQEYEVT 85
            I +RGS  Y+ P+  E +VT
Sbjct: 1330 IGIRGSIGYIAPEANETDVT 1349


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.135    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,638
Number of Sequences: 37544
Number of extensions: 115982
Number of successful extensions: 248
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 7
length of query: 105
length of database: 14,793,348
effective HSP length: 72
effective length of query: 33
effective length of database: 12,090,180
effective search space: 398975940
effective search space used: 398975940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)