GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000345-TA|BGIBMGA000345-PA|IPR000618|Insect cuticle
protein
         (105 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.56 
SB_37643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.74 
SB_226| Best HMM Match : Tektin (HMM E-Value=0)                        29   0.97 
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            28   1.3  
SB_13205| Best HMM Match : RCSD (HMM E-Value=4.7)                      27   2.2  
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   6.9  
SB_5519| Best HMM Match : WIF (HMM E-Value=4.6)                        26   6.9  
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.1  

>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 30  DNSFVRPDGYDFEFKTSDGVSRKEEAGLITVGENQGIAVRGSYSYLTPDGQEYEVTFTAD 89
           D+ F  P   D E  TSDGV+R+E+A      ++   +V  S   L        VT T  
Sbjct: 215 DDYFEFPWTLDMEPYTSDGVARREQANASPDMDSDNGSVTSSSQSLNSIHSNSSVTVTPS 274

Query: 90  DKGYKPTIRIIDHSQQ 105
           +  Y   +  I HS Q
Sbjct: 275 EITY-DLVGAIVHSGQ 289


>SB_37643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 7/73 (9%)

Query: 25  AEILSDNSFVRPDGYDFEFKTSDGVSRKEEAGLITVGENQGIAVRG-SYSYLTPDG--QE 81
           ++++S++ +   DG    ++TSDGVSR+ E   I+ G ++   + G S  Y T DG  + 
Sbjct: 64  SDVVSEH-YETSDGVSKRYETSDGVSRRYE---ISDGVSRRYEISGVSERYETSDGVSKR 119

Query: 82  YEVTFTADDKGYK 94
           YE +     + Y+
Sbjct: 120 YETSDGVSRRRYE 132


>SB_226| Best HMM Match : Tektin (HMM E-Value=0)
          Length = 534

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 73 SYLTPDGQEYEVTFTADDKGYKP 95
          +YL P G  YE T+TA  +G +P
Sbjct: 21 AYLRPTGGPYETTYTASFQGIRP 43


>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 37  DGYDFEFKTSDGVSRKEEAGLITVGENQGIAVRGSYS-YLTPDGQEYEVTFTADD 90
           + + F+F ++D   ++    L  V   Q     G ++ ++ P G+E E  F++DD
Sbjct: 217 ENFTFDFWSTDPQMKEPRFSLTVVDSEQHRNQNGIFAIFIVPQGRETEWLFSSDD 271


>SB_13205| Best HMM Match : RCSD (HMM E-Value=4.7)
          Length = 302

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 14  GVIIAQEQKSTAEILSDNSFVRPDGYDFEFKTSDGVSRKEEAGLITVGE 62
           G I  Q   S AE+++ + F + + Y    KT +  SR+ E G   V +
Sbjct: 229 GPIKDQLGNSGAEVMTSHKFYQDEDYSQRSKTEEEESREPEVGHFQVDD 277


>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1457

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 47   DGVSRKEEAGLITVGENQGIAVRGSYSYLTPDGQEYEVTFTADDKGYKPTIRII 100
            D +S+ E A L TV  +     +GS   +TP+G+ +EV    ++    P  R++
Sbjct: 1093 DDISQHEYASLKTVQSSPSEGRQGSV--VTPEGEGFEVIDPHEEMEEVPESRVV 1144


>SB_11236| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 365

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 4   LKLFVLCALAGVI--IAQEQKSTAEILSDNSF 33
           L + V+C L   I  IA+  KST  ++SDNSF
Sbjct: 199 LPVLVMCVLYLQIYFIARTVKSTPRLVSDNSF 230


>SB_5519| Best HMM Match : WIF (HMM E-Value=4.6)
          Length = 347

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 71  SYSYLTPDGQEYEVTFTADDKGYKPTIRIID 101
           S ++L PD  EY     A D  Y  T+ + D
Sbjct: 254 SAAFLFPDSSEYHTCVMASDTKYGSTVLLTD 284


>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2956

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)

Query: 15   VIIAQEQKSTAEILSDNSFVRPDGYDFEFKTSDGVSRKEEAGLITVGENQG 65
            V+ A    S  E+++D   + PDG D ++ + +      + G I V    G
Sbjct: 1982 VMRASLDDSFREVIADKGIISPDGIDVDYISGNVYWTDPKRGRIEVASLDG 2032


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.135    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,698
Number of Sequences: 59808
Number of extensions: 129106
Number of successful extensions: 420
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 15
length of query: 105
length of database: 16,821,457
effective HSP length: 72
effective length of query: 33
effective length of database: 12,515,281
effective search space: 413004273
effective search space used: 413004273
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)