GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000345-TA|BGIBMGA000345-PA|IPR000618|Insect cuticle
protein
         (105 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    52   1e-09
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   4.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   4.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   4.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    19   9.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    19   9.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
          protein protein.
          Length = 138

 Score = 52.0 bits (119), Expect = 1e-09
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 3  ALKLFVLCALAGVIIAQEQKSTAE----ILSDNSFVRPDG-YDFEFKTSDGVSRKEEAGL 57
          AL   VLC  A +   Q     A+    I S    V  DG Y   F+TS+G+S +E    
Sbjct: 1  ALVAVVLCTTATLAAPQRPSGGADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQP 60

Query: 58 ITVGENQGIAVRGSYSYLTPDGQEYEVTFTADDKGYK 94
            V     +  +GS SY  PDGQ+  +T+ AD+ G++
Sbjct: 61 KQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQ 97


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 73  SYLTPDGQ--EYEVTFTADDKGYKPTIRIIDHSQ 104
           S  +PD    +YEV F    + Y P +R  + SQ
Sbjct: 96  SLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 129


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 73  SYLTPDGQ--EYEVTFTADDKGYKPTIRIIDHSQ 104
           S  +PD    +YEV F    + Y P +R  + SQ
Sbjct: 96  SLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 129


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 73  SYLTPDGQ--EYEVTFTADDKGYKPTIRIIDHSQ 104
           S  +PD    +YEV F    + Y P +R  + SQ
Sbjct: 147 SLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 180


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 73  SYLTPDGQ--EYEVTFTADDKGYKPTIRIIDHSQ 104
           S  +PD    +YEV F    + Y P +R  + SQ
Sbjct: 96  SLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQ 129


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 56  GLITVGENQGIAVRGSYSYLTPDGQEYEVTFTADDKGYKPTI 97
           GL+  G  Q   +   +SY++ +      T   DD G   T+
Sbjct: 270 GLVRRGILQSGTLNAPWSYMSGEKANEVATILVDDCGCNSTM 311


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 11/42 (26%), Positives = 18/42 (42%)

Query: 56  GLITVGENQGIAVRGSYSYLTPDGQEYEVTFTADDKGYKPTI 97
           GL+  G  Q   +   +SY++ +      T   DD G   T+
Sbjct: 270 GLVRRGILQSGTLNAPWSYMSGEKANEVATILVDDCGCNSTM 311


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 76  TPDGQEYEVTFTADDKGYKPTIRIIDHS 103
           TPD  + ++ F       KP ++I D S
Sbjct: 413 TPDDPDIQIFFAGYQAICKPKLKIADLS 440


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 24  TAEILSDNSFVRPD 37
           T +  +DN+ VRPD
Sbjct: 256 TIKYRNDNNIVRPD 269


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 53  EEAGLITVGENQGIAVRGSYSYLTP 77
           +  G + VG   G+     Y Y+TP
Sbjct: 293 QPVGTLIVGALAGLLSVLGYKYITP 317


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.135    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,805
Number of Sequences: 429
Number of extensions: 1038
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 105
length of database: 140,377
effective HSP length: 50
effective length of query: 55
effective length of database: 118,927
effective search space:  6540985
effective search space used:  6540985
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)