GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000344-TA|BGIBMGA000344-PA|undefined
         (104 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.33 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   1.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   3.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    20   7.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.33
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 53   NLSDIPEKNKEISTENTYDTSTDSGFTTSIYYDDE 87
            +  D+   +   STE+  DT+ +     +++Y+DE
Sbjct: 1407 HFKDVKLSDFGFSTEDILDTADEDLLINNVFYEDE 1441


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 48  NDTSLNLSDIPEKNKEISTENTYDTSTDSGFTTSI 82
           ND +  L D+ E+NK +        +    FTT++
Sbjct: 125 NDKNSFLHDVTERNKLVRLSGDGSVTYGMRFTTTL 159


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 44  KGNQNDTSLNLSDIPEKNKEIS------TENTYDTSTDSGFTTSIYYDDELFNR 91
           K N  DT   L D+   N E        +E+T D+    GFTT +   + L  R
Sbjct: 188 KLNSLDTEQILDDMYNNNTEWEIVHMSHSESTIDSKFGLGFTTDLLSYNILLRR 241


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 41  ENEKGNQNDTSLNLSDIPEKNKEISTENTYDTSTDSGFTTSIYYDDELFN 90
           E E+  +     +LS+   K    +  N Y+ +  + +   +YY + + N
Sbjct: 305 ERERSKEPKIISSLSN-NYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIIN 353


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.126    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,473
Number of Sequences: 429
Number of extensions: 1199
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 104
length of database: 140,377
effective HSP length: 49
effective length of query: 55
effective length of database: 119,356
effective search space:  6564580
effective search space used:  6564580
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.8 bits)
S2: 38 (19.4 bits)