GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000343-TA|BGIBMGA000343-PA|IPR000618|Insect cuticle
protein
         (118 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy...    25   2.4  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    25   3.1  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   4.1  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    24   7.2  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   7.2  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    24   7.2  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    23   9.6  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    23   9.6  

>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 18/64 (28%), Positives = 27/64 (42%)

Query: 49  DGSKRDEQGEVINVGTDDESIVIKGSYSWVAPDGITYTVTYVADDKGFQPSIEQGPGGAI 108
           D  K+D    V   GT   S + K  +  V+     Y V Y+ + KG     +  PG  +
Sbjct: 140 DIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVL 199

Query: 109 PSSV 112
            SS+
Sbjct: 200 HSSL 203


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 59  VINVGTDDESIVIKGSYSWVAPDGITYTVTYVADDKGFQPSIEQGP 104
           ++++G DDE+I +    + + PD       Y       + ++E GP
Sbjct: 206 LVSIGKDDEAIQVMCKNAELPPDSDIIQTEYKQIKSDCEAAVEGGP 251


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 71  IKGSYSWVAPDGITYTVTYVADDKGFQPSIEQGPGGAIPSSV 112
           + G+   + P G T T T  +  + F  ++  G  G IP +V
Sbjct: 926 VSGNVEVIEPSGSTVTSTIYSGSESFTTTLAVG-SGTIPGTV 966


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 19  QGPKDDNVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQ 56
           +G  + N   LKF  D  G+ +   +YEQTD +   E+
Sbjct: 615 KGAVEINSTELKFQLDEYGMPNKCEVYEQTDANHLIEE 652


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 22  KDDNVQLLKFDSDNDGLGSYRFLYEQTDGSKRD 54
           K+ ++ L + D+D+ GLGS +F   Q   + RD
Sbjct: 248 KEKDLVLKRLDTDHAGLGSKKFKKYQILEACRD 280


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 74  SYSWVAPDGITYTVTYVADDKGFQPSIEQG 103
           S + + P    Y  TYV   + F+PS+ +G
Sbjct: 53  SLTLITPATCLYLSTYVEAKRRFKPSVGEG 82


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1116

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 61   NVGTDDESIVIKGSYSWVAPDGI 83
            NV  +D ++ ++GS  W+AP+ I
Sbjct: 982  NVYDNDANLSMQGSIFWMAPEVI 1004


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 49   DGSKRDEQGEVINVGTDDESIVIKGS 74
            DG  RD + + + V T DE   I GS
Sbjct: 1029 DGLDRDTEWKRVEVWTPDEGNAINGS 1054


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,166
Number of Sequences: 5004
Number of extensions: 25565
Number of successful extensions: 31
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 8
length of query: 118
length of database: 2,362,478
effective HSP length: 65
effective length of query: 53
effective length of database: 2,037,218
effective search space: 107972554
effective search space used: 107972554
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)