GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000343-TA|BGIBMGA000343-PA|IPR000618|Insect cuticle
protein
         (118 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0586 - 18736643-18736914,18737085-18737187,18737279-187379...    27   3.0  
01_05_0596 + 23511148-23512650                                         27   3.0  
11_01_0536 + 4243306-4243449,4243790-4243856,4243996-4244054,424...    27   3.9  
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845...    27   3.9  
11_06_0377 - 22900042-22900452,22900527-22902236                       27   5.2  
04_04_0935 - 29509135-29511732                                         26   9.0  

>09_04_0586 -
           18736643-18736914,18737085-18737187,18737279-18737900,
           18738376-18738463,18738537-18738614,18738741-18738816,
           18738912-18738970,18739061-18739127,18739268-18739405
          Length = 500

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 50  GSKRDEQGEVINVGTDDESIVIKGSYSWVAPDGITYTVTYVA 91
           G+ R   G  +   T ++S ++KGSY ++   G+ Y  TY A
Sbjct: 305 GTMRGWLGNRLPEFTPEQSAMVKGSYDFI---GVNYYTTYYA 343


>01_05_0596 + 23511148-23512650
          Length = 500

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 85  YTVTYVADDKGFQPSIEQGPGGAIPSSV 112
           YT T V DD  FQ S+    GGA  S+V
Sbjct: 47  YTATAVEDDGLFQGSLAADEGGAAASTV 74


>11_01_0536 +
           4243306-4243449,4243790-4243856,4243996-4244054,
           4244157-4244314,4244742-4244990,4245079-4245451,
           4245580-4245702
          Length = 390

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 50  GSKRDEQGEVINVGTDDESIVIKGSYSWVAPDGITYTVTYVA 91
           G+ R   G+ +   T  +S ++KGSY ++   GI Y  TY A
Sbjct: 279 GTMRGWLGDRLPKFTPAQSAMVKGSYDFI---GINYYTTYYA 317


>10_06_0143 -
           11183574-11183761,11183989-11184344,11184437-11184592,
           11184825-11184994,11185906-11186064,11186856-11187164,
           11187281-11187576,11187825-11188174,11188279-11188434,
           11188634-11188803,11189289-11189447,11190702-11191010,
           11191172-11191458,11191911-11192263,11192366-11192521,
           11192680-11192849,11195800-11195958,11196937-11197254,
           11197658-11197786
          Length = 1449

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 13  LAHSAPQGPKDDNVQLLKFDSDNDGLG----SYRFLYEQTDGSKRDEQGEVINVGTDDES 68
           +A +   GP ++  Q+++ DSD   +     + +FL  +  GS   + G   N G DD S
Sbjct: 592 IATATVPGP-NETFQIIRLDSDKSRMRIRAPNGKFLQVKAMGSVTADHGASTNWGNDDPS 650

Query: 69  IVI 71
           + +
Sbjct: 651 VFV 653


>11_06_0377 - 22900042-22900452,22900527-22902236
          Length = 706

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 25 NVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDESIVIKGSYSWVAPDGIT 84
          N  LL F +  + L       E   G  R  QG  ++ G DD+    +G     AP G  
Sbjct: 18 NGVLLAFLAPEEALALGGDHNEALHGELRVRQGHEVDAGGDDDDEAWRGEVR--APQGRA 75

Query: 85 YTVTYVADDKGFQ 97
          Y      D++G +
Sbjct: 76 YDDDAAEDEEGLR 88


>04_04_0935 - 29509135-29511732
          Length = 865

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 31  FDSDNDGLGSYRFLYE-QTDGSKRDEQGEVINVGTDDESIVIKGSYSWVAPDGITYTVTY 89
           F+ D+   GSY  L +  +D  K D+  +V  +   D+ I     YSW+  +   +   +
Sbjct: 700 FELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKL-MRDKGIKKNPGYSWMEVENKVH--VF 756

Query: 90  VADD 93
            ADD
Sbjct: 757 KADD 760


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,092,278
Number of Sequences: 37544
Number of extensions: 181055
Number of successful extensions: 273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 6
length of query: 118
length of database: 14,793,348
effective HSP length: 73
effective length of query: 45
effective length of database: 12,052,636
effective search space: 542368620
effective search space used: 542368620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)