GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000343-TA|BGIBMGA000343-PA|IPR000618|Insect cuticle
protein
         (118 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.00 
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)                 28   1.7  
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)                   28   2.3  
SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   2.3  
SB_35680| Best HMM Match : Sushi (HMM E-Value=4.4e-22)                 28   2.3  
SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)                    28   2.3  
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_8425| Best HMM Match : EGF (HMM E-Value=0)                          28   2.3  
SB_40037| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08)                   27   5.3  
SB_12810| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)         26   7.0  
SB_18989| Best HMM Match : TLP-20 (HMM E-Value=1.9)                    26   7.0  
SB_2768| Best HMM Match : zf-CCCH (HMM E-Value=0.004)                  26   7.0  
SB_37281| Best HMM Match : AMP-binding (HMM E-Value=3.78351e-44)       26   7.0  
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   26   7.0  
SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)              26   7.0  
SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                 26   9.3  
SB_31970| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_16925| Best HMM Match : efhand (HMM E-Value=3e-22)                  26   9.3  

>SB_33387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 12  ALAHSAPQGPKDDNVQLLKFDSDN--DGLGSYRFLYEQTDGSKRDEQGEVINVGTDDESI 69
           ALA+S     KDD +  L+ D DN    L     + EQ      +EQ   I    DDE  
Sbjct: 490 ALANSCDIKEKDDLISKLQDDLDNQKSELKKLEGIVEQQKQKNNEEQSRCI----DDERT 545

Query: 70  VIKGSYSWVA 79
            +K   +W+A
Sbjct: 546 SMKAFDAWLA 555


>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
          Length = 820

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 41  YRFLYEQTDGSKRDEQGEVINVG---TDDES-IVIKGSYSWVAPDGITYTVTYVADDKGF 96
           YR +   T GS+R +   +++ G   TD  + +VI  +Y+W    G  YT+  V  ++  
Sbjct: 509 YRNITSGTPGSERIQTSILLSRGDPLTDGVTKVVINATYTWQPVRGGVYTIILVTSNRMD 568

Query: 97  QPSIEQGPG 105
              +E+  G
Sbjct: 569 ARFLEKATG 577


>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
          Length = 1052

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 54  DEQGEVINVGTDDESIVIK---GSYSWVAPDGITYTVTYVADDKG 95
           D+ G VI V +DD  +VI+   G    V  D +   +T ++DD G
Sbjct: 312 DDMGVVITVLSDDMGVVIRDDMGVVITVLSDDMGVVITVLSDDMG 356



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 5/42 (11%)

Query: 54  DEQGEVINVGTDDESIVIKGSYSWVAPDGITYTVTYVADDKG 95
           D+ G VI V +DD  +VI+     V+ D +   +  ++DD G
Sbjct: 353 DDMGVVIRVSSDDMGVVIR-----VSSDDMGVVIRVLSDDMG 389


>SB_45123| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 336

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/52 (25%), Positives = 27/52 (51%)

Query: 55  EQGEVINVGTDDESIVIKGSYSWVAPDGITYTVTYVADDKGFQPSIEQGPGG 106
           + G+  ++ TD++++  K +YS    +G++Y     A + GF  +     GG
Sbjct: 50  KSGKFFDLFTDEKALQRKYTYSADVCEGLSYAAKRFASENGFINNKRNSSGG 101


>SB_35680| Best HMM Match : Sushi (HMM E-Value=4.4e-22)
          Length = 442

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 32  DSDNDGLGSYRFLYEQTDGSKRDEQG----EVINVGTDDESIVIKGSYSWVA 79
           D D +  G     ++  DG   D+ G    + ++ G DD S+   GSY W A
Sbjct: 122 DGDGNDHGDDDGFHDGDDGCCYDDDGFGDGDDVDGGDDDGSVDYDGSYQWCA 173


>SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)
          Length = 438

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 53  RDEQGEVINVGTDDESIVIKGSYSWVAPDGITYTVTYVADDKGFQPS 99
           RD    V+++   D+S   K  Y W+  D   Y+    A+ + F P+
Sbjct: 290 RDFLDRVMDIEDSDKSFKFKKRYCWLTMDNFLYSHAPDAETRQFLPT 336


>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 42  RFLYEQTDGSKRDEQGEVINVGTDDES--IVIKGSYSWVAPDGITY 85
           RF  E  +G+ R  + +   VG +     +V  G+YS  A DG+TY
Sbjct: 232 RFDLEDFEGNTRYAEYDDFRVGVESAKYQLVSIGTYSGTAGDGLTY 277


>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1955

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 32   DSDNDGLGSYRFLYEQTDGSKRDEQG----EVINVGTDDESIVIKGSYSWVA 79
            D D +  G     ++  DG   D+ G    + ++ G DD S+   GSY W A
Sbjct: 1635 DGDGNDHGDDDGFHDGDDGCCYDDDGFGDGDDVDGGDDDGSVDYDGSYQWCA 1686



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 32   DSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDESIV 70
            D  +  + SY+  Y   DGSK     +V+   TDD++IV
Sbjct: 1028 DGSSQWVTSYKLEYS-ADGSKWTMYAKVLTGNTDDKTIV 1065


>SB_40037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 20  GPKDDNVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDES 68
           G K +    L++   ++G G Y    +  D  + D+  E +N+  DD+S
Sbjct: 74  GNKSEEKDNLEYLEKHNGEGDY---IDSDDDGENDDNNEEVNITNDDKS 119


>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 42  RFLYEQTDGSKRDEQGEVINVGTDDESI 69
           R L +QT+  KR+E+ + +  G DD +I
Sbjct: 153 RRLSKQTNEKKREEEAKKVKAGKDDTAI 180


>SB_30526| Best HMM Match : LRR_1 (HMM E-Value=8e-08)
          Length = 219

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 32  DSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDE 67
           D D D +    F+Y+    S+ +E+GE  N G D+E
Sbjct: 158 DEDGDEVNCLVFMYD----SQEEEEGEDFNPGEDEE 189


>SB_12810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 69  IVIKGSYSWVAPDGITYTVTYVADDKG 95
           +V + S   + P G+T  ++YVADD+G
Sbjct: 446 VVSRNSLLVLYPAGLTKCLSYVADDRG 472


>SB_45939| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00051)
          Length = 575

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 32  DSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDESIVIKGSYSWVAPDGITYTVTYVA 91
           DSDND    +R   + T   +   QG VIN    D   ++ G+ SW+ PD I+    +  
Sbjct: 150 DSDNDDQQVFRTKRQCTRLRRGVAQG-VINEHQPD---IVFGNESWLKPD-ISSAEVFPE 204

Query: 92  DDKGFQPSIEQGPGGAIPSSVIASLV 117
           + K  +   +   GG +  +V   L+
Sbjct: 205 NYKILRKDRDNNRGGGVFQAVKNDLI 230


>SB_18989| Best HMM Match : TLP-20 (HMM E-Value=1.9)
          Length = 487

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 28  LLKFDSDNDG-LGSYRFLYEQTDGSKRDEQG----EVINVGTDDES 68
           LLK+     G L S   +YEQTDG  + + G    EV N G   +S
Sbjct: 100 LLKYGYKKTGELPSIDSIYEQTDGENKVDSGSDSMEVENTGDSPDS 145


>SB_2768| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
          Length = 389

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 45  YEQTDGSKRDEQGEVINVGTDDESIVIK 72
           Y+QTDG   +   E+I +  D+E  ++K
Sbjct: 273 YDQTDGMNSELFNELITIFPDNEEAILK 300


>SB_37281| Best HMM Match : AMP-binding (HMM E-Value=3.78351e-44)
          Length = 393

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 34  DNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDESIVIKG 73
           +N     +R  Y   DG KRDE G     G  D+ + + G
Sbjct: 226 ENVYFDKFRGYYTTGDGCKRDENGYYWVTGRTDDCMNVSG 265


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 26 VQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVG 63
          + LLK +SD   +GS + L   T  SK + +  +IN+G
Sbjct: 38 INLLKTESDKCKIGSLKILQPLTTSSKYN-RNAIINLG 74


>SB_35310| Best HMM Match : Cadherin (HMM E-Value=5.9e-23)
          Length = 1250

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 54  DEQGEVINVGTDDESIVIKGSYSWVAPDGITYTVTYVADDKG 95
           D Q     +G+D +S+++ GS  +     I   V  VA DKG
Sbjct: 666 DSQNYAFRLGSDGKSVLVNGSLDYEVEPVIDIVV--VATDKG 705


>SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 1124

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 17  APQGPKDDNVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGE-VINVGTDDESIVIKG 73
           +P G +++ +   ++D   +GL  + F+     G   + +GE V+NV TD+ S + KG
Sbjct: 796 SPSGTRNEMLSTRRYDDSKNGLHDWTFMTVHNWG--ENPKGEWVMNV-TDNLSALNKG 850


>SB_31970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 3  KLLVLFSFLALAHSAPQGPKDDNVQLLKFDSDNDGL 38
          KLLV+ + +A A++   G   D  QL  + S  DGL
Sbjct: 4  KLLVILALVAFAYTLDLGVNIDVTQLQNYPSLLDGL 39


>SB_16925| Best HMM Match : efhand (HMM E-Value=3e-22)
          Length = 132

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 19 QGPKDDNVQLLKFDSDNDGLGSYRF 43
          + P D  +Q +  D+D DG G  RF
Sbjct: 34 ENPSDKEIQDMIADADKDGSGEIRF 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,471,712
Number of Sequences: 59808
Number of extensions: 208514
Number of successful extensions: 330
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 28
length of query: 118
length of database: 16,821,457
effective HSP length: 73
effective length of query: 45
effective length of database: 12,455,473
effective search space: 560496285
effective search space used: 560496285
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)