GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000343-TA|BGIBMGA000343-PA|IPR000618|Insect cuticle
protein
         (118 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75710-2|CAB00024.1|  741|Caenorhabditis elegans Hypothetical pr...    31   0.21 
U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha ...    27   3.4  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    26   6.0  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    26   6.0  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    26   6.0  
AL132948-3|CAC51075.1|  129|Caenorhabditis elegans Hypothetical ...    26   7.9  

>Z75710-2|CAB00024.1|  741|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 741

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 21  PKDDNVQLLK-FDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDE 67
           P+D N   LK   + N     Y+ +++Q D  ++D +G VIN   DD+
Sbjct: 662 PEDSNDYFLKSMMAKNTERTVYKAMFDQFDSPEQDARGSVINEKEDDD 709


>U28742-2|AAA68332.2|  925|Caenorhabditis elegans Adaptin, alpha
           chain (clathrinassociated complex) protein 2 protein.
          Length = 925

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 23  DDNVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDE 67
           + +  L+ FDS ND   S   ++    G+    QG+ + +   D+
Sbjct: 642 EGSTSLVDFDSTNDTTASLADVFANNSGTGLGAQGDEVEIANKDD 686


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 36   DGLGSYRFLYEQTDGSKRDEQGEVINVGTDDESIVIKGSYSWVAPDGITYTVTYVADDKG 95
            D  GS  F+ E      +D++G+ +  G D E +    S ++V P  ++   T   DD G
Sbjct: 2814 DSTGS--FVTEDGTIIAKDDEGKPL--GPDGEVLPTDASGNYVYPVTVSDEQTLPTDDTG 2869

Query: 96   FQPSIEQGPGGA-IPSSVIASLVG 118
                  +GP G  +P+     ++G
Sbjct: 2870 KTVYPIRGPDGTPLPTDASGPVIG 2893


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 36   DGLGSYRFLYEQTDGSKRDEQGEVINVGTDDESIVIKGSYSWVAPDGITYTVTYVADDKG 95
            D  GS  F+ E      +D++G+ +  G D E +    S ++V P  ++   T   DD G
Sbjct: 2859 DSTGS--FVTEDGTIIAKDDEGKPL--GPDGEVLPTDASGNYVYPVTVSDEQTLPTDDTG 2914

Query: 96   FQPSIEQGPGGA-IPSSVIASLVG 118
                  +GP G  +P+     ++G
Sbjct: 2915 KTVYPIRGPDGTPLPTDASGPVIG 2938


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 36   DGLGSYRFLYEQTDGSKRDEQGEVINVGTDDESIVIKGSYSWVAPDGITYTVTYVADDKG 95
            D  GS  F+ E      +D++G+ +  G D E +    S ++V P  ++   T   DD G
Sbjct: 2859 DSTGS--FVTEDGTIIAKDDEGKPL--GPDGEVLPTDASGNYVYPVTVSDEQTLPTDDTG 2914

Query: 96   FQPSIEQGPGGA-IPSSVIASLVG 118
                  +GP G  +P+     ++G
Sbjct: 2915 KTVYPIRGPDGTPLPTDASGPVIG 2938


>AL132948-3|CAC51075.1|  129|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3 protein.
          Length = 129

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 81  DGITYTVTYVADDKGFQPSIEQ 102
           +G+TYT+ Y  D + F   +EQ
Sbjct: 58  NGLTYTLEYAKDKQKFDEEVEQ 79


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,946
Number of Sequences: 27539
Number of extensions: 145549
Number of successful extensions: 222
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 15
length of query: 118
length of database: 12,573,161
effective HSP length: 73
effective length of query: 45
effective length of database: 10,562,814
effective search space: 475326630
effective search space used: 475326630
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)