GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000343-TA|BGIBMGA000343-PA|IPR000618|Insect cuticle
protein
         (118 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    48   3e-08
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   2.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   2.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   2.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   3.8  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   8.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   8.7  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   8.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   8.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   8.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   8.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
          protein protein.
          Length = 138

 Score = 48.0 bits (109), Expect = 3e-08
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 14 AHSAPQGPKDDNVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDESIVIKG 73
          A   P G  D +  +     + +  G+Y   +E ++G    E G+   V  ++  +V +G
Sbjct: 15 APQRPSGGADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQPKQVD-NETPVVSQG 73

Query: 74 SYSWVAPDGITYTVTYVADDKGFQ 97
          S S+ APDG   ++TYVAD+ GFQ
Sbjct: 74 SDSYTAPDGQQVSITYVADENGFQ 97


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 29  LKFDSDNDGLGSYRFL 44
           +KFD   DGL  Y  L
Sbjct: 388 VKFDEHGDGLARYEIL 403


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 86  TVTYVADDKG 95
           T+ Y+ADDKG
Sbjct: 202 TIVYMADDKG 211


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 29  LKFDSDNDGLGSYRFL 44
           +KFD   DGL  Y  L
Sbjct: 478 VKFDEHGDGLARYEIL 493


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 84  TYTVTYVADDKG 95
           T T+ Y+AD+KG
Sbjct: 202 TNTMVYIADEKG 213


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 86  TVTYVADDKG 95
           T+ Y+AD+KG
Sbjct: 201 TMVYIADEKG 210


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 101 EQGPGGAIPSSVIASLVG 118
           E+GP    PSSVI +  G
Sbjct: 292 EKGPNSQGPSSVIDTNTG 309


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 86  TVTYVADDKG 95
           T  Y+ADD+G
Sbjct: 202 TTVYIADDRG 211


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 86  TVTYVADDKG 95
           T+ Y+AD+KG
Sbjct: 201 TMVYIADEKG 210


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 86  TVTYVADDKG 95
           T+ Y+AD+KG
Sbjct: 201 TMVYIADEKG 210


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 5/10 (50%), Positives = 8/10 (80%)

Query: 73  GSYSWVAPDG 82
           G++SW+  DG
Sbjct: 368 GAFSWIGSDG 377


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,409
Number of Sequences: 429
Number of extensions: 1513
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 118
length of database: 140,377
effective HSP length: 51
effective length of query: 67
effective length of database: 118,498
effective search space:  7939366
effective search space used:  7939366
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)