GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000343-TA|BGIBMGA000343-PA|IPR000618|Insect cuticle
protein
         (118 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18590.1 68417.m02752 expressed protein                             29   0.82 
At1g15280.2 68414.m01829 glycine-rich protein                          28   1.4  
At1g15280.1 68414.m01828 glycine-rich protein                          28   1.4  
At3g14890.2 68416.m01883 phosphoesterase identical to phosphoest...    27   3.3  
At3g14890.1 68416.m01882 phosphoesterase identical to phosphoest...    27   3.3  
At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to...    27   4.4  
At5g25140.1 68418.m02979 cytochrome P450 family protein CYTOCHRO...    27   4.4  
At1g08135.1 68414.m00894 cation/hydrogen exchanger (CHX6b) Note:...    27   4.4  
At5g61480.1 68418.m07714 leucine-rich repeat transmembrane prote...    26   5.8  
At3g28455.1 68416.m03555 CLE25, putative CLAVATA3/ESR-Related 25...    26   5.8  
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN...    26   5.8  
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i...    26   7.6  
At3g07400.1 68416.m00882 lipase class 3 family protein contains ...    26   7.6  
At1g74360.1 68414.m08615 leucine-rich repeat transmembrane prote...    26   7.6  
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD...    26   7.6  

>At4g18590.1 68417.m02752 expressed protein
          Length = 106

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 53 RDEQGEVINVGTDDESIVIKGS 74
          R + G VI   TDD+ IV+KGS
Sbjct: 31 RSDVGSVIGKSTDDQQIVVKGS 52


>At1g15280.2 68414.m01829 glycine-rich protein
          Length = 585

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 23 DDNVQLLKFDSDNDGLGSYRFLYEQTDGS-KRDEQGEVINVG 63
          D+ V  +K+D+D DG  SY    E++ G    D+ G V   G
Sbjct: 53 DEEVGTVKYDNDEDGEDSYEDDEEESGGGIDNDKSGVVKEAG 94


>At1g15280.1 68414.m01828 glycine-rich protein
          Length = 584

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 23 DDNVQLLKFDSDNDGLGSYRFLYEQTDGS-KRDEQGEVINVG 63
          D+ V  +K+D+D DG  SY    E++ G    D+ G V   G
Sbjct: 53 DEEVGTVKYDNDEDGEDSYEDDEEESGGGIDNDKSGVVKEAG 94


>At3g14890.2 68416.m01883 phosphoesterase identical to
           phosphoesterase [Arabidopsis thaliana] GI:21630064;
           contains Pfam profile PF00645: Poly(ADP-ribose)
           polymerase and DNA-Ligase Zn-finger region
          Length = 638

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 30  KFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDESI 69
           K D DND   +   L E+T+  K  E GE++    +DES+
Sbjct: 361 KMDEDNDDTEAKIKLTEETNKRKHSEVGEMVE---EDESL 397


>At3g14890.1 68416.m01882 phosphoesterase identical to
           phosphoesterase [Arabidopsis thaliana] GI:21630064;
           contains Pfam profile PF00645: Poly(ADP-ribose)
           polymerase and DNA-Ligase Zn-finger region
          Length = 694

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 30  KFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDESI 69
           K D DND   +   L E+T+  K  E GE++    +DES+
Sbjct: 417 KMDEDNDDTEAKIKLTEETNKRKHSEVGEMVE---EDESL 453


>At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to
          glutamine synthetase, chloroplast precursor
          (glutamate-- ammonia ligase, GS2) [Arabidopsis
          thaliana] SWISS-PROT:Q43127
          Length = 430

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/59 (27%), Positives = 27/59 (45%)

Query: 25 NVQLLKFDSDNDGLGSYRFLYEQTDGSKRDEQGEVINVGTDDESIVIKGSYSWVAPDGI 83
          +V L +    N+ +  +R L  Q+D S  +    ++N+ T   S  I   Y W+   GI
Sbjct: 31 SVVLKQKKQSNNKVRGFRVLALQSDNSTVNRVETLLNLDTKPYSDRIIAEYIWIGGSGI 89


>At5g25140.1 68418.m02979 cytochrome P450 family protein CYTOCHROME
           P450 71B1 - Thlaspi arvense, EMBL:L24438
          Length = 496

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 15  HSAPQGPKDDNVQLL-KFDSDNDGLGSYRFLYEQTDG 50
           H    G KDD V LL K +    GLG ++F    T G
Sbjct: 253 HLEDGGSKDDIVDLLLKVERGEIGLGEFQFTRNHTKG 289


>At1g08135.1 68414.m00894 cation/hydrogen exchanger (CHX6b) Note:
           CHX6a and CHX6b were originally 1 gene but were split
           pased on alignments with other family members; may be a
           pseudogene and requires futher investigation; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 824

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 12  ALAHSAPQGPKDDNVQLLKFDSDNDGL 38
           AL  + P GP   +V + KFDS N+G+
Sbjct: 348 ALGLAVPNGPPLGSVFIQKFDSFNEGI 374


>At5g61480.1 68418.m07714 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 1041

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 62  VGTDDESIVIKGSYSWVAPDGITYTVTYVADDK 94
           + TD+   V+ GSY ++AP+   Y  T   D K
Sbjct: 877 IQTDESMSVVAGSYGYIAPE---YAYTLQVDKK 906


>At3g28455.1 68416.m03555 CLE25, putative CLAVATA3/ESR-Related 25
          (CLE25)
          Length = 81

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 5  LVLFSFLA-LAHSAPQGPKDDNVQLLKFDSDNDGL 38
          L++F  +  LA+SAP  P  +NV+ L+F   +  L
Sbjct: 18 LIVFLLVGILANSAPSVPSSENVKTLRFSGKDVNL 52


>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
            topoisomerase II / DNA gyrase (TOP2) identical to
            SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
            thaliana}
          Length = 1473

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 38   LGSYRFLYEQTDGSKRDEQGEVINVGTDDESIVIK 72
            L  Y F     D SK  E  + I V  DD+ +V++
Sbjct: 1307 LAQYNFGSAPADSSKTAETSKAIAVDDDDDDVVVE 1341


>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
           identical to actin-related protein 6 (ARP6) [Arabidopsis
           thaliana] GI:21427467; contains Pfam profile PF00022:
           Actin
          Length = 421

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 70  VIKGSYSWVAPDGITYTVTYVAD 92
           +IK +Y  V PDG+T+T  YV D
Sbjct: 238 LIKSTY--VLPDGVTHTKGYVKD 258


>At3g07400.1 68416.m00882 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 1003

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 21  PKDDNVQLLKFDSDNDGLGSYRFLYEQTDGS 51
           P D N +LLK D    GL    F++ Q +G+
Sbjct: 570 PGDKNAELLKVDITGFGLHLCSFVHAQVNGN 600


>At1g74360.1 68414.m08615 leucine-rich repeat transmembrane protein
           kinase, putative similar to brassinosteroid insensitive
           1 GB:AAC49810 (putative receptor protein kinase);
           contains Pfam profiles: PF00560 Leucine Rich Repeat (17
           repeats), PF00069 Eukaryotic protein kinase domain
          Length = 1106

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 59  VINVGTDDESIVIKGSYSWVAPD-GITYTVTYVAD 92
           ++NVG    S VI G+  +VAP+ G T+  T   D
Sbjct: 965 LLNVGDSHVSTVIAGTIGYVAPEYGQTWQATTRGD 999


>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative similar to sucrose
           synthase GI:6682841 from [Citrus unshiu]
          Length = 942

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 45  YEQTDGSKRDEQGEVINVGTDDESIVIKGSYSWVAPDGITY--TVTY--VADDKG--FQP 98
           ++ +  + R+E+ E+  +    E   +KG + W+A     Y  +  Y  +AD KG   QP
Sbjct: 617 FDMSKSNDREEKAEIKKMHDLIEKYKLKGKFRWIAAQTDRYRNSELYRCIADTKGVFVQP 676

Query: 99  SIEQGPG 105
           ++ +  G
Sbjct: 677 ALYEAFG 683


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.136    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,933
Number of Sequences: 28952
Number of extensions: 142919
Number of successful extensions: 235
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 15
length of query: 118
length of database: 12,070,560
effective HSP length: 72
effective length of query: 46
effective length of database: 9,986,016
effective search space: 459356736
effective search space used: 459356736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)