Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000342-TA|BGIBMGA000342-PA|IPR000618|Insect cuticle
protein, IPR010916|TonB box, N-terminal
         (125 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)                 27   3.4  
SB_14545| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                  27   4.5  
SB_11607| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.9  

>SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)
          Length = 657

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/62 (29%), Positives = 25/62 (40%)

Query: 28  PPPREVQILKYENVNSGRGSYKFGFGQSDGTRFEQEGALKNEGQEHESLSVRGQFSWVGP 87
           PPP EV  +    VNSG  S       S       +G L  +G +   +   GQ + +G 
Sbjct: 174 PPPDEVHDIATAQVNSGGQSATALGSNSAQVSNMAKGGLAGQGGQMNQMRQGGQMNQMGQ 233

Query: 88  DG 89
            G
Sbjct: 234 GG 235


>SB_14545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 88  DGVTYTVTY---VADEDGYQPEIEQGPGGALPSSILSSL 123
           DG T+T      + D+DG+ PE+   PG  + SS+L S+
Sbjct: 56  DGTTHTPNVCINLTDDDGFVPELPSLPG--MKSSLLHSM 92


>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1003

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 11  PSFKLLALCLVGIVATAPPPR 31
           P+F L  LC VG+++   PPR
Sbjct: 591 PNFPLEGLCFVGLMSMIDPPR 611


>SB_11607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 181

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/42 (38%), Positives = 19/42 (45%)

Query: 39  ENVNSGRGSYKFGFGQSDGTRFEQEGALKNEGQEHESLSVRG 80
           +NVN   G+ K   GQ  GT     GA+K   Q     S RG
Sbjct: 133 DNVNENNGTRKDFVGQIYGTMDVPRGAVKRGSQNQGLPSGRG 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,678,404
Number of Sequences: 59808
Number of extensions: 190116
Number of successful extensions: 244
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 4
length of query: 125
length of database: 16,821,457
effective HSP length: 74
effective length of query: 51
effective length of database: 12,395,665
effective search space: 632178915
effective search space used: 632178915
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)