GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000342-TA|BGIBMGA000342-PA|IPR000618|Insect cuticle
protein, IPR010916|TonB box, N-terminal
         (125 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   3.5  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    24   8.2  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 23  IVATAPPPREVQILKYENVNSGRGSYKFGFGQSDG---TRFEQEGALK 67
           +++T+PP   V      ++NS   ++   FG  +G   +RF+  G  K
Sbjct: 503 VMSTSPPNHSVYPYSQLSINSVTANHGQNFGGQNGGNVSRFDDHGRFK 550


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 13  FKLLALCLVGIVATAPPPREVQILKYENVNSGRGSYKFGFGQSD 56
           F+L +LC   I     P ++  I+K    N+G      G G +D
Sbjct: 870 FELASLCRAVICCRVSPLQKALIVKMVKRNTGEVLLAIGDGAND 913


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,990
Number of Sequences: 5004
Number of extensions: 24727
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 2
length of query: 125
length of database: 2,362,478
effective HSP length: 65
effective length of query: 60
effective length of database: 2,037,218
effective search space: 122233080
effective search space used: 122233080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)