GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000342-TA|BGIBMGA000342-PA|IPR000618|Insect cuticle
protein, IPR010916|TonB box, N-terminal
         (125 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-3|CAC51075.1|  129|Caenorhabditis elegans Hypothetical ...    28   2.3  
Z22177-5|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr...    26   6.9  

>AL132948-3|CAC51075.1|  129|Caenorhabditis elegans Hypothetical
           protein Y39B6A.3 protein.
          Length = 129

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 86  GPDGVTYTVTYVADEDGYQPEIEQ 109
           G +G+TYT+ Y  D+  +  E+EQ
Sbjct: 56  GCNGLTYTLEYAKDKQKFDEEVEQ 79


>Z22177-5|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical
           protein ZK512.5 protein.
          Length = 1232

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 30  PREVQILKYENVNSGRGSYKFGFGQSDGTRFEQEGALKNEGQEHESLSVRGQFS 83
           PR     +Y N +S R  + +  G+SD T  E E   + E   +  +  R Q S
Sbjct: 157 PRSTAAERYANASSMRNGFVYDSGESDKTSEELEEDEEEEEVRNFYMEGRAQGS 210


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,466,402
Number of Sequences: 27539
Number of extensions: 142353
Number of successful extensions: 215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 2
length of query: 125
length of database: 12,573,161
effective HSP length: 73
effective length of query: 52
effective length of database: 10,562,814
effective search space: 549266328
effective search space used: 549266328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)