GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000342-TA|BGIBMGA000342-PA|IPR000618|Insect cuticle
protein, IPR010916|TonB box, N-terminal
         (125 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    43   1e-06
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   2.4  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   3.1  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              20   9.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   9.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 42.7 bits (96), Expect = 1e-06
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 46  GSYKFGFGQSDGTRFEQEGALKNEGQEHESLSVRGQFSWVGPDGVTYTVTYVADEDGYQ 104
           G+Y   F  S+G   ++ G  K    E   +S +G  S+  PDG   ++TYVADE+G+Q
Sbjct: 40  GNYINNFETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQVSITYVADENGFQ 97


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 80  GQFSWVGPDG 89
           G FSW+G DG
Sbjct: 368 GAFSWIGSDG 377


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 50  FGFGQSDGTRFEQEGALKNEGQE---HESLSVRGQFSWVGPDGVTYTVTYVADEDGYQPE 106
           F F   DG       AL+ +G +     ++S   +FS        +T+    D   +  E
Sbjct: 231 FNFQWKDGLFGLSLSALQTDGYKILYFHAMSSIAEFSVSTEVLQDHTLEKSNDYYAFHFE 290

Query: 107 IEQGPGGALPSSILSSLAG 125
            E+GP    PSS++ +  G
Sbjct: 291 GEKGPNSQGPSSVIDTNTG 309


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 104 QPEIEQGPGGAL 115
           Q E+++GPGG L
Sbjct: 106 QSEVQRGPGGRL 117


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 15 LLALCLVGIVATA 27
          + A CLVGI+A +
Sbjct: 7  IFAFCLVGILAVS 19


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
          methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 33 VQILKYENVNSGRGSYKFGFGQSDGTRFEQEGAL 66
          VQ ++++N      + K      D TR EQE  L
Sbjct: 65 VQTVRFKNELERNITIKLDTRAEDSTRGEQEANL 98


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,446
Number of Sequences: 429
Number of extensions: 1671
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 125
length of database: 140,377
effective HSP length: 51
effective length of query: 74
effective length of database: 118,498
effective search space:  8768852
effective search space used:  8768852
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)