GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000342-TA|BGIBMGA000342-PA|IPR000618|Insect cuticle
protein, IPR010916|TonB box, N-terminal
         (125 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77740.1 68414.m09051 1-phosphatidylinositol-4-phosphate 5-ki...    33   0.057
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf...    31   0.30 
At1g21980.1 68414.m02750 1-phosphatidylinositol-4-phosphate 5-ki...    30   0.40 
At5g57460.1 68418.m07181 expressed protein                             29   1.2  
At1g52000.1 68414.m05866 jacalin lectin family protein similar t...    29   1.2  
At5g61930.1 68418.m07774 expressed protein contains Pfam PF05634...    28   2.1  
At3g10340.1 68416.m01240 phenylalanine ammonia-lyase, putative s...    28   2.1  
At1g80620.1 68414.m09461 ribosomal protein S15 family protein si...    28   2.1  
At3g50870.1 68416.m05570 zinc finger (GATA type) family protein ...    27   4.9  
At3g20490.1 68416.m02595 expressed protein                             26   6.5  
At5g57040.1 68418.m07120 lactoylglutathione lyase family protein...    26   8.6  
At5g51810.1 68418.m06424 gibberellin 20-oxidase, putative simila...    26   8.6  

>At1g77740.1 68414.m09051 1-phosphatidylinositol-4-phosphate
           5-kinase, putative / PIP kinase, putative /
           PtdIns(4)P-5-kinase, putative / diphosphoinositide
           kinase, putative strong similarity to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 754

 Score = 33.1 bits (72), Expect = 0.057
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 24  VATAPPPREVQILKYENVNSGRGSYKFGFGQSDGTRFEQEGALKNEGQEHESLSVRGQFS 83
           V   PPP +V+     N +   G++  GF    G    ++G +     +    S +G+FS
Sbjct: 63  VTPTPPPVDVE-KPLPNGDLYMGTFSGGFPNGSGKYLWKDGCMYEGEWKRGKASGKGKFS 121

Query: 84  WVGPDGVTY 92
           W  P G TY
Sbjct: 122 W--PSGATY 128



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 46  GSYKFGFGQSDGTRFEQEGALKNEGQEHESLSVRGQFSWVGPDGVTYTVTYVAD 99
           G +K G     G +F        EG E +S  + G  ++VG DG TY  ++VAD
Sbjct: 107 GEWKRGKASGKG-KFSWPSGATYEG-EFKSGRMEGSGTFVGVDGDTYRGSWVAD 158


>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 709

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 34  QILKYENVNSGRGSYKFGFGQSDGTRFEQEGALKNEG-QEHESLSVRGQFSWVGPDGVTY 92
           QIL   + +S   S   G  +SD +RF+  G L N     +E    +G   W+   GV  
Sbjct: 149 QILLTRDYSSNSSSIAEGLSESDSSRFDSYGDLPNSPMSRYEESPKKGAKGWLKKLGV-- 206

Query: 93  TVTYVADE 100
            +T+V D+
Sbjct: 207 -LTHVLDK 213


>At1g21980.1 68414.m02750 1-phosphatidylinositol-4-phosphate
           5-kinase, putative / PIP kinase, putative /
           PtdIns(4)P-5-kinase, putative / diphosphoinositide
           kinase, putative strong similarity to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam
           profiles PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase, PF02493: MORN repeat
          Length = 752

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 46  GSYKFGFGQSDGTRFEQEGALKNEGQEHESLSVRGQFSWVGPDGVTY 92
           GS+  GF    G    ++G +     +    S +G+FSW  P G TY
Sbjct: 83  GSFSGGFPHGSGKYLWKDGCMYEGDWKRGKASGKGKFSW--PSGATY 127



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 46  GSYKFGFGQSDGTRFEQEGALKNEGQEHESLSVRGQFSWVGPDGVTYTVTYVAD 99
           G +K G     G +F        EG E +S  + G  ++ G DG TY  T+VAD
Sbjct: 106 GDWKRGKASGKG-KFSWPSGATYEG-EFKSGRMEGFGTFTGADGDTYRGTWVAD 157


>At5g57460.1 68418.m07181 expressed protein
          Length = 646

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 9   KEPSFKLLALCLVGIVATAPPPREVQILKYENVNSGRGSY 48
           K+PS   L L L G+  T  PP E     + NV    G Y
Sbjct: 293 KDPSSTDLTLALAGLEVTTLPPAEATQSTHINVEGFEGQY 332


>At1g52000.1 68414.m05866 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296,
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile: PF01419
           jacalin-like lectin domain
          Length = 730

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 28  PPPREVQIL--KY-ENVNSGRGSY--KFGFGQSDG----TRFEQEGALKNEGQEHESLSV 78
           PPP +V+     Y E  + G   +  K   GQ D      +F+ E   K E QEH  +++
Sbjct: 582 PPPNKVKAQGGSYGETFDDGAFDHVRKVYVGQGDSGVAYVKFDYEKDGKKETQEHGKMTL 641

Query: 79  RG--QFSWVGPDGVTYTVTYVADEDGYQPEI 107
            G  +F     D +T    YV    GY+ EI
Sbjct: 642 SGTEEFEVDSDDYITSMEVYVDKVYGYKSEI 672


>At5g61930.1 68418.m07774 expressed protein contains Pfam PF05634:
           Arabidopsis thaliana protein of unknown function
           (DUF794)
          Length = 340

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 32  EVQILKYENVNSGRGSYKFGFGQSDGTRFEQEGALKNEGQEHESLSVRGQFSWVGPD-GV 90
           E +I+ +E+VN G          S  T  +++   K E +  + LS     SW     GV
Sbjct: 165 EGRIVDFEDVNDGNSELAV---TSTTTLIQEDDRCKEEKKSLKELSFETMESWFEMVLGV 221

Query: 91  TYTVT-YVADEDGYQPEIEQGPGG 113
              +  Y     GY PEI+ GP G
Sbjct: 222 RKLMERYRVWTCGYCPEIQVGPKG 245


>At3g10340.1 68416.m01240 phenylalanine ammonia-lyase, putative
           similar to phenylalanine ammonia-lyase GB:S48726
           [Petroselinum crispum]
          Length = 707

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 39  ENVNSGRGSYKF--GFGQSDGTRFEQEGALKNE 69
           E++N G  SY    GFG +   R +Q GAL+NE
Sbjct: 90  ESMNRGTDSYGVTTGFGATSHRRTKQGGALQNE 122


>At1g80620.1 68414.m09461 ribosomal protein S15 family protein
           similar to ribosomal protein S15 GB:AAD36415 from
           [Thermotoga maritima]
          Length = 414

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/22 (59%), Positives = 16/22 (72%)

Query: 25  ATAPPPREVQILKYENVNSGRG 46
           ATAPPPR++Q L  +NV S  G
Sbjct: 103 ATAPPPRDMQDLFKQNVLSKSG 124


>At3g50870.1 68416.m05570 zinc finger (GATA type) family protein
          Arabidopsis thaliana mRNA for GATA transcription factor
          3, PID:e1254739
          Length = 295

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 40 NVNSGRGSYKFGFGQSDGTRFEQEG 64
          N NS  GSY   F   +G  FEQ G
Sbjct: 33 NNNSNAGSYSMVFSMQNGGVFEQNG 57


>At3g20490.1 68416.m02595 expressed protein
          Length = 458

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 21  VGIVATAPPPREVQILKYENVNSGRGSYKFGFGQSDGTRFEQEGALKNEGQEHESLSVRG 80
           +GIV      REV ++ Y N    +GS K G   S   R  +  +  ++ QE    S   
Sbjct: 321 LGIVNDRESQREVFLVDYMNQFGSKGSSKAGDSSSKSCRRGKTKSKVSKSQE----SAHN 376

Query: 81  QFSWVGP 87
              W+ P
Sbjct: 377 SEGWLNP 383


>At5g57040.1 68418.m07120 lactoylglutathione lyase family protein /
           glyoxalase I family protein contains Pfam PF00903:
           glyoxalase family protein
          Length = 197

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 68  NEGQEHESLSVRGQFSWVGPD 88
           NE + H+ L  RG + WVG +
Sbjct: 105 NEARPHDKLPYRGAWLWVGSE 125


>At5g51810.1 68418.m06424 gibberellin 20-oxidase, putative similar
           to gibberellin 20-oxidase GI:1109695, GI:9791186
          Length = 378

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 17  ALCLVGIVATAPPPREVQILKYENVNSGRGSYKFGFGQSDGTRFEQEGALKNEGQE-HES 75
           A    G  +T  P +E    ++ N NSG  + +  F  + G  FEQ G +  +  E   S
Sbjct: 135 ASSFTGRFSTKLPWKETLSFQFSNDNSGSRTVQDYFSDTLGQEFEQFGKVYQDYCEAMSS 194

Query: 76  LSVR 79
           LS++
Sbjct: 195 LSLK 198


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,423,954
Number of Sequences: 28952
Number of extensions: 144461
Number of successful extensions: 256
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 14
length of query: 125
length of database: 12,070,560
effective HSP length: 73
effective length of query: 52
effective length of database: 9,957,064
effective search space: 517767328
effective search space used: 517767328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)