Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000341-TA|BGIBMGA000341-PA|IPR000618|Insect cuticle
protein
         (78 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   0.66 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   0.66 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   0.87 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   3.5  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        19   6.1  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    19   6.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     19   8.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    19   8.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           19   8.1  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 0.66
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 21  NEGQEEESLAVRGKFSWVGPD 41
           N GQ+ ESL + GK  +  P+
Sbjct: 304 NTGQDPESLLINGKGQFRDPN 324


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 0.66
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 21  NEGQEEESLAVRGKFSWVGPD 41
           N GQ+ ESL + GK  +  P+
Sbjct: 304 NTGQDPESLLINGKGQFRDPN 324


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 0.87
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 42 GVTYTVTFVADEDGYQP 58
          G TY  T  +D DG+ P
Sbjct: 21 GTTYKYTGCSDNDGFLP 37


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.8 bits (39), Expect = 3.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 36  SWVGPDGVTYTVT 48
           +WVG DG  Y  T
Sbjct: 158 AWVGSDGSLYNHT 170


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 16 EGTLKNEGQEEESLAV 31
          E TL+N G  +ES+ +
Sbjct: 7  EQTLENAGMPDESINI 22


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory
          receptor candidate 27 protein.
          Length = 346

 Score = 19.0 bits (37), Expect = 6.1
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 43 VTYTVTFVADEDGYQPEIEQGP 64
          V Y V+ +++   Y P +  GP
Sbjct: 54 VNYNVSEISENFYYLPAMSTGP 75


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 18.6 bits (36), Expect = 8.1
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 7   QSDGTVFEQEGTLKNEGQEEESLAVRGKFSWV 38
           Q DG   +   T  +E  ++E    R  + W+
Sbjct: 183 QDDGDDGQGSSTNNDEDDDDEETGDRQIYPWM 214


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 18.6 bits (36), Expect = 8.1
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 7   QSDGTVFEQEGTLKNEGQEEESLAVRGKFSWV 38
           Q DG   +   T  +E  ++E    R  + W+
Sbjct: 183 QDDGDDGQGSSTNNDEDDDDEETGDRQIYPWM 214


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 18.6 bits (36), Expect = 8.1
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 7   QSDGTVFEQEGTLKNEGQEEESLAVRGKFSWV 38
           Q DG   +   T  +E  ++E    R  + W+
Sbjct: 183 QDDGDDGQGSSTNNDEDDDDEETGDRQIYPWM 214


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,280
Number of Sequences: 317
Number of extensions: 762
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 78
length of database: 114,650
effective HSP length: 46
effective length of query: 32
effective length of database: 100,068
effective search space:  3202176
effective search space used:  3202176
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.1 bits)
S2: 36 (18.6 bits)