GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000341-TA|BGIBMGA000341-PA|IPR000618|Insect cuticle
protein
         (78 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   0.91 
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    24   2.8  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    23   3.7  
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    23   6.4  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   6.4  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    22   8.5  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    22   8.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    22   8.5  

>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 0.91
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 16  EGTLKNEGQEEESLAVRGKFSWVGPD 41
           EGTL+N     E +A    F W+ PD
Sbjct: 646 EGTLQNGVTTSERIARHVDFPWIQPD 671


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 18  TLKNEGQEEESLAVRGKFSWVGPDGVTYTV 47
           T K+  +EEES  V+G+  +  P+  +Y V
Sbjct: 379 TQKSSAKEEESDKVKGESVYPKPESESYDV 408


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 36  SWVGPDGVTYTVTFVADEDGYQPEI 60
           SW G  G   ++TF A   GY P +
Sbjct: 144 SWHGVTGGAASLTFAAARRGYGPAL 168


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 7   QSDGTVFEQEGTLKNEGQEEE 27
           + D T FE E  L+N+G+  E
Sbjct: 126 EQDFTEFEDEQELQNQGESAE 146


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 7   QSDGTVFEQEGTLKNEGQEEESLAVRGKFS 36
           +SD  + E+E  L NE + E  L     F+
Sbjct: 157 ESDEAISEEEEDLSNENKSESQLGESFSFN 186


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 47  VTFVADEDGYQPEIEQGPGGAV 68
           V FV  +DG  P   +G G AV
Sbjct: 892 VQFVYGDDGLDPTYMEGDGQAV 913


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1220

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 26  EESLAVRGKFSWVGPDGVTYTVTFVADEDGYQPEIEQGPGGAVPSAI 72
           + S +V G    + P G T T T  +  + +   +  G  G +P  +
Sbjct: 921 QASGSVSGNVEVIEPSGSTVTSTIYSGSESFTTTLAVG-SGTIPGTV 966


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 4   RYSQSDGTVFEQEGTLKNEGQEE 26
           R  +    +FE+E TL+N+ Q+E
Sbjct: 160 RLKREKDALFEEEQTLQNKIQDE 182


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 389,369
Number of Sequences: 5004
Number of extensions: 13850
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 78
length of database: 2,362,478
effective HSP length: 58
effective length of query: 20
effective length of database: 2,072,246
effective search space: 41444920
effective search space used: 41444920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 45 (22.2 bits)