GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000341-TA|BGIBMGA000341-PA|IPR000618|Insect cuticle
protein
         (78 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14545| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.53 
SB_11565| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.2  
SB_19526| Best HMM Match : Pentaxin (HMM E-Value=1.7e-10)              27   2.8  
SB_28411| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_33537| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  
SB_58333| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_14545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 244

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 5/39 (12%)

Query: 41 DGVTYTVTF---VADEDGYQPEIEQGPGGAVPSAILHSL 76
          DG T+T      + D+DG+ PE+   PG  + S++LHS+
Sbjct: 56 DGTTHTPNVCINLTDDDGFVPELPSLPG--MKSSLLHSM 92


>SB_11565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)

Query: 17  GTLKNEGQEEESLAVRGKFSWVGPDGVTYTVTFVADEDGYQPEIEQ 62
           GTLK+ G  E++L++         DG   ++   AD+DGYQ E+++
Sbjct: 63  GTLKDHG--EKALSMEDSLQCPLHDG---SIVLGADQDGYQSEMDE 103


>SB_19526| Best HMM Match : Pentaxin (HMM E-Value=1.7e-10)
          Length = 274

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 17  GTLKNEGQEEESLAVRGKFSWVGPDGVTYTVTFVADEDGYQPEIEQ 62
           GTLK  G  EE+L++         DG   ++   AD+DGYQ ++++
Sbjct: 175 GTLKGYG--EEALSMEDSLQCPLHDG---SIVLGADQDGYQSKMDE 215


>SB_28411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 5  YSQSDGTVFEQEGTLKNEGQEEESLAVRGKFSWVGP 40
          + ++    F+++G L +E  EE    V+G+ +W+ P
Sbjct: 41 WKRTGSMYFDEDGDLAHEFYEEVRPEVKGEKAWMRP 76


>SB_33537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 4   RYSQSDGTVFEQEGTLKNEGQEEESLAVRGKFSWVG 39
           R+   DG V + +    N G+EE   ++ GKFS VG
Sbjct: 387 RHGSEDGWV-KTDIRGDNHGKEETLTSINGKFSRVG 421


>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 19  LKNEGQEEESLAVRGKFSWVGPDGVTYTVTFVADEDG 55
           L  +G  E SLA +G    + P GV  T T +    G
Sbjct: 558 LMRQGHVEGSLASQGDQVHITPQGVVMTATVLQQNQG 594


>SB_58333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 38  VGPDGVTYTVTFVADEDGYQPEIEQGPGGAVP 69
           + P G   ++   +D D Y+P  E  P G  P
Sbjct: 500 IRPTGEKLSLNNTSDTDDYEPVAEPAPNGNQP 531


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,004
Number of Sequences: 59808
Number of extensions: 112816
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 7
length of query: 78
length of database: 16,821,457
effective HSP length: 56
effective length of query: 22
effective length of database: 13,472,209
effective search space: 296388598
effective search space used: 296388598
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)