GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000341-TA|BGIBMGA000341-PA|IPR000618|Insect cuticle
protein
         (78 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    37   3e-05
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   0.58 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   2.3  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    20   3.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    19   9.4  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
          protein protein.
          Length = 138

 Score = 36.7 bits (81), Expect = 3e-05
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 5  YSQSDGTVFEQEGTLKNEGQEEESLAVRGKFSWVGPDGVTYTVTFVADEDGYQ 57
          +  S+G   ++ G  K +   E  +  +G  S+  PDG   ++T+VADE+G+Q
Sbjct: 46 FETSNGISHQESGQPK-QVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQ 97


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 0.58
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 33  GKFSWVGPDG 42
           G FSW+G DG
Sbjct: 368 GAFSWIGSDG 377



 Score = 19.0 bits (37), Expect = 7.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 8   SDGTVFEQEGTLKNEGQ 24
           SDG   E EGTL  + Q
Sbjct: 385 SDGNEAEVEGTLSVQPQ 401


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 2.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 3   YRYSQSDGTVFEQEGTLKNEGQEEE 27
           Y YS+S+G+       L  + +EEE
Sbjct: 142 YFYSKSNGSNSSNSDVLFKQNKEEE 166


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)

Query: 57  QPEIEQGPGG 66
           Q E+++GPGG
Sbjct: 106 QSEVQRGPGG 115


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 18.6 bits (36), Expect = 9.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 59  EIEQGPGGAVPSAILHSLAG 78
           E E+GP    PS+++ +  G
Sbjct: 290 EGEKGPNSQGPSSVIDTNTG 309


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,847
Number of Sequences: 429
Number of extensions: 899
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 78
length of database: 140,377
effective HSP length: 47
effective length of query: 31
effective length of database: 120,214
effective search space:  3726634
effective search space used:  3726634
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.1 bits)
S2: 36 (18.6 bits)