GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000341-TA|BGIBMGA000341-PA|IPR000618|Insect cuticle
protein
         (78 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43830.1 68418.m05359 expressed protein similar to auxin down...    27   1.2  
At2g34470.1 68415.m04231 urease accessory protein (UREG) identic...    27   1.6  
At2g34400.1 68415.m04215 pentatricopeptide (PPR) repeat-containi...    26   3.6  
At4g34500.1 68417.m04904 protein kinase family protein contains ...    25   4.8  
At5g15210.1 68418.m01782 zinc finger homeobox family protein / Z...    25   6.4  
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ...    25   6.4  
At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter...    25   6.4  
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)         25   8.4  
At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containi...    25   8.4  
At1g59453.1 68414.m06679 transcription factor-related weak simil...    25   8.4  
At1g59077.1 68414.m06670 hypothetical protein                          25   8.4  
At1g58766.1 68414.m06659 hypothetical protein                          25   8.4  

>At5g43830.1 68418.m05359 expressed protein similar to auxin
           down-regulated protein ARG10 [Vigna radiata] GI:2970051,
           wali7 (aluminum-induced protein) [Triticum aestivum]
           GI:451193
          Length = 251

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 12  VFEQEGTLKNEGQEEESLAVR---GKFSWVGPDGVTYTVTFVADEDGYQP 58
           V E   TL++ G       VR   GKF+++  D V  TV   AD DG  P
Sbjct: 106 VIEAYRTLRDRGPYPVDKVVRDFHGKFAFILFDSVKKTVFAAADADGSVP 155


>At2g34470.1 68415.m04231 urease accessory protein (UREG)
          identical to urease accessory protein UREG GI:4324678
          from [Arabidopsis thaliana]; contains Pfam profile:
          PF01495 HypB/UreG nucleotide-binding domain
          Length = 275

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 21 NEGQEEESLAVRGKFSWVGPDGVTY 45
          +E   E+S    GK SWVG DG  Y
Sbjct: 13 HEHDHEKSDGGEGKASWVGKDGKVY 37


>At2g34400.1 68415.m04215 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 617

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 21  NEGQEEESLAVRGKFSWVGPDGVTYTVTFVA 51
           N+ +   SL  R KFS + PD  TY   F+A
Sbjct: 107 NDHEAALSLYRRMKFSGLKPDKFTYNFVFIA 137


>At4g34500.1 68417.m04904 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 437

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 3   YRYSQSDGTVFEQEGTLKNEGQEEESLAV 31
           YR   SDG+V   +  L N+GQ E+   V
Sbjct: 160 YRADFSDGSVAAVKNLLNNKGQAEKEFKV 188


>At5g15210.1 68418.m01782 zinc finger homeobox family protein /
          ZF-HD homeobox family protein various predicted
          proteins, Arabidopsis thaliana
          Length = 271

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 41 DGVTYTVTFVADEDGYQPEIE 61
          D +  T T V+D D  QPEIE
Sbjct: 2  DVIATTTTIVSDLDSRQPEIE 22


>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
           PF03385: Protein of unknown function, DUF288
          Length = 765

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 1   MFYRYSQSDGTVFEQEGTLKN 21
           +F RYS +DG VF ++ T+ N
Sbjct: 569 IFDRYSSADGFVFVEDDTVLN 589


>At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter
           (MRP2) almost identical to MgATP-energized glutathione
           S-conjugate pump GI:2909781 from [Arabidopsis thaliana]
          Length = 1623

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 6   SQSDGTVFEQEGTLKNEGQEEE 27
           SQ D  V   EGT+K EG  EE
Sbjct: 803 SQVDRIVLVHEGTVKEEGTYEE 824


>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
          Length = 250

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 13  FEQEGTLKNEGQEEESLAVRGKFSWVGPDGVTYTVTFVADEDGYQPEIEQ 62
           F ++   ++ GQE   LA+R     V   G    V  +  E+G   ++E+
Sbjct: 173 FLEKNYKESAGQETVKLAIRALLEVVESGGKNIEVAVMTREEGVLKQLEE 222


>At2g26790.1 68415.m03213 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 799

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 21  NEGQEEESLAVRGKFSWVGPDGVTYTV 47
           NE Q+ ESL    K   + PD VTYTV
Sbjct: 640 NELQKAESLFEDMKQRGIKPDVVTYTV 666


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 22   EGQEEESLAVRGK--FSWVGPDGVTYTVTF 49
            EG+ +ES +V+ +  F W+  DG    V F
Sbjct: 1607 EGETKESTSVKSQPIFPWINADGSVNKVVF 1636


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 22  EGQEEESLAVRGK--FSWVGPDGVTYTVTF 49
           EG+ +ES +V+ +  F W+  DG    V F
Sbjct: 543 EGETKESTSVKSQPIFPWINADGSVNKVVF 572


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 22  EGQEEESLAVRGK--FSWVGPDGVTYTVTF 49
           EG+ +ES +V+ +  F W+  DG    V F
Sbjct: 543 EGETKESTSVKSQPIFPWINADGSVNKVVF 572


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,145
Number of Sequences: 28952
Number of extensions: 83464
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 12
length of query: 78
length of database: 12,070,560
effective HSP length: 57
effective length of query: 21
effective length of database: 10,420,296
effective search space: 218826216
effective search space used: 218826216
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)