Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000340-TA|BGIBMGA000340-PA|IPR000618|Insect cuticle
protein
         (165 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   3.3  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   4.3  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    25   7.5  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    24   9.9  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    24   9.9  

>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 85  LNAYDFAWELSDGSKHQEQGQLKNQGTENEAISV 118
           LNA +++  LS  S  +  G L   G+E+ A+S+
Sbjct: 348 LNASNYSPLLSPSSHRKTSGNLSRTGSESSAVSL 381


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 92  WELSDGSKHQEQGQLKNQGTENEAISVQ--GQYSWVAPDGITYTVTYI 137
           W+  D S    Q         N+  S Q  G   WVAPD I   + Y+
Sbjct: 5   WKRHDSSNIPTQPSPSASPKSNKPSSAQRFGNLPWVAPDVIQSQIEYL 52


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 21  TRVYRDRCCVLRSIAGSNGVLQPMFVNGRS 50
           T VYRD C +  ++A   G++ P+  N  S
Sbjct: 308 TLVYRDFCDLSIAVATPKGLVTPVIRNAES 337


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 69  NPQDVQILRYDSNNDGLNAYDFAWELSDGSKHQEQG 104
           N + +Q L  ++ N G  ++ +AW L    + + +G
Sbjct: 205 NSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARG 240


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 27  RCCVLRSIAGSNGVLQPMFVNGRSGIQF 54
           +C VL   AG +GV+    ++G +GI+F
Sbjct: 349 QCFVLIRNAGFHGVITLQILSGLTGIRF 376


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,126
Number of Sequences: 5004
Number of extensions: 22162
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 5
length of query: 165
length of database: 2,362,478
effective HSP length: 68
effective length of query: 97
effective length of database: 2,022,206
effective search space: 196153982
effective search space used: 196153982
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)