GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000340-TA|BGIBMGA000340-PA|IPR000618|Insect cuticle
protein
         (165 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0001 - 8844030-8845061,8845392-8845912,8845962-8845977           29   1.9  

>11_03_0001 - 8844030-8845061,8845392-8845912,8845962-8845977
          Length = 522

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 46  VNGRSGIQFXXXXXXXXXXXXPQNPQDVQILRYDSNNDGLNAYDFAWELSDGSKHQ---E 102
           V  R  +Q             PQNPQDV I    + N   +  D + E   GS+H+   +
Sbjct: 414 VQKRDEMQAGLTGGRKDDAAAPQNPQDVMIPAMVNLNQPASFGDTSME-DTGSQHKRTLD 472

Query: 103 QGQLKNQGTENEAI 116
           Q  +K QG   +A+
Sbjct: 473 QPGIKQQGRVQQAL 486


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,003,383
Number of Sequences: 37544
Number of extensions: 136503
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 1
length of query: 165
length of database: 14,793,348
effective HSP length: 77
effective length of query: 88
effective length of database: 11,902,460
effective search space: 1047416480
effective search space used: 1047416480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)