GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000340-TA|BGIBMGA000340-PA|IPR000618|Insect cuticle
protein
         (165 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    55   4e-10
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.2  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   8.2  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 54.8 bits (126), Expect = 4e-10
 Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 92  WELSDGSKHQEQGQLKNQGTENEAISVQGQYSWVAPDGITYTVTYIADENGF 143
           +E S+G  HQE GQ K    E   +S QG  S+ APDG   ++TY+ADENGF
Sbjct: 46  FETSNGISHQESGQPKQVDNETPVVS-QGSDSYTAPDGQQVSITYVADENGF 96


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 34   IAGSNGVLQPMFVNGRSGIQF 54
            I G NG+  P F+ G   + F
Sbjct: 1138 IPGPNGIKMPSFMEGMPHLPF 1158


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 131 TYTVTYIADENG 142
           T T+ YIADE G
Sbjct: 202 TNTMVYIADEKG 213


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 114 EAISVQGQYSWVAPDGITYTVTYI 137
           EA +V    SW   D +T + TYI
Sbjct: 43  EAGNVSCSVSWEVHDPVTNSDTYI 66


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,350
Number of Sequences: 429
Number of extensions: 1599
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 165
length of database: 140,377
effective HSP length: 53
effective length of query: 112
effective length of database: 117,640
effective search space: 13175680
effective search space used: 13175680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)