GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000340-TA|BGIBMGA000340-PA|IPR000618|Insect cuticle
protein
         (165 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67460.1 68414.m07681 hypothetical protein contains Pfam doma...    27   6.3  
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-...    27   8.4  

>At1g67460.1 68414.m07681 hypothetical protein contains Pfam domain
           PF03193: Protein of unknown function, DUF258
          Length = 434

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 84  GLNAYDFAWELSDGSKHQEQGQLKNQGTENE 114
           G   YD+  +L D  K  E+ QLK  GT+ E
Sbjct: 357 GWERYDYFLQLLDEIKIDEECQLKKYGTKRE 387


>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 916

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 8/41 (19%), Positives = 19/41 (46%)

Query: 90  FAWELSDGSKHQEQGQLKNQGTENEAISVQGQYSWVAPDGI 130
           + W L +  K ++    + +  + E +  + +Y W   DG+
Sbjct: 456 YEWHLEEKEKKKQMSTEEKKALKEEKMKQEEKYMWAVVDGV 496


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,573
Number of Sequences: 28952
Number of extensions: 117475
Number of successful extensions: 234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 2
length of query: 165
length of database: 12,070,560
effective HSP length: 76
effective length of query: 89
effective length of database: 9,870,208
effective search space: 878448512
effective search space used: 878448512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)