Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000339-TA|BGIBMGA000339-PA|IPR000618|Insect cuticle
protein
         (296 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    41   2e-05
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 40.7 bits (91), Expect = 2e-05
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 115 LFVLVVCIVQSLTEGQ-PLDGAHGNDIIYNEFVNENIDKGEYSYRFKT---IDETEKDET 170
           L  +V+C   +L   Q P  GA  + +I ++ +  N D G Y   F+T   I   E  + 
Sbjct: 2   LVAVVLCTTATLAAPQRPSGGADKDAVITSQQLEVNFD-GNYINNFETSNGISHQESGQP 60

Query: 171 AYFNEDGDLVVVGYYSYVDPEGKIHYVPYRADKTGFHIE 209
              + +  +V  G  SY  P+G+   + Y AD+ GF ++
Sbjct: 61  KQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQ 99



 Score = 35.9 bits (79), Expect = 4e-04
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 227 LGGYETSEGSFRKEEXXXXXXXXXXXVV-RGEYGYIDPSGHRHAIKYIADVNGFQPQ 282
           +  +ETS G   +E            VV +G   Y  P G + +I Y+AD NGFQ Q
Sbjct: 43  INNFETSNGISHQESGQPKQVDNETPVVSQGSDSYTAPDGQQVSITYVADENGFQVQ 99



 Score = 33.9 bits (74), Expect = 0.002
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 29  AEIIENNYTIDVKGNYVFSFKTTNDLIRYEEGIVVNSGEPNEHIEVYGYYSYINDAGEPV 88
           A I      ++  GNY+ +F+T+N +   E G      +    +   G  SY    G+ V
Sbjct: 27  AVITSQQLEVNFDGNYINNFETSNGISHQESG-QPKQVDNETPVVSQGSDSYTAPDGQQV 85

Query: 89  RVDYSATEEGYKI 101
            + Y A E G+++
Sbjct: 86  SITYVADENGFQV 98


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/51 (25%), Positives = 23/51 (45%)

Query: 138  NDIIYNEFVNENIDKGEYSYRFKTIDETEKDETAYFNEDGDLVVVGYYSYV 188
            N  I   +V   +   E  Y F+T+D +++D   +  +  +L     YS V
Sbjct: 1006 NGEILGYYVGYRLSSSEKPYMFETVDFSKEDGKEHHLQIMNLKTYTQYSVV 1056


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 254 VRGEYGYIDPSGHRHAIKYI 273
           V+G  G++ P  HRH I  I
Sbjct: 976 VQGRVGFVTPFEHRHFISGI 995


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 160 KTIDETEKDETAYFNEDG 177
           KT+  T K + +YF+E G
Sbjct: 7   KTVSYTNKKDESYFDEGG 24


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 268 HAIKYIADVNGFQPQFGEDHVRY 290
           H + Y+      + QFGE++V+Y
Sbjct: 271 HGLYYVNTAPFMKSQFGENNVQY 293


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 54  LIRYEEGIVVNSGEPNEHIEVYGY 77
           L +Y   I+++  EP E I  YGY
Sbjct: 363 LYQYNFNIIIS--EPTERISPYGY 384


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 179 LVVVGYYSYVDPEGKIHYVPYRAD 202
           +++ G +  +DP   +H+ P R D
Sbjct: 780 ILINGVWMIIDPAKAMHHYPTRED 803


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.139    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,493
Number of Sequences: 429
Number of extensions: 4330
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 9
length of query: 296
length of database: 140,377
effective HSP length: 57
effective length of query: 239
effective length of database: 115,924
effective search space: 27705836
effective search space used: 27705836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)