GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000339-TA|BGIBMGA000339-PA|IPR000618|Insect cuticle
protein
         (296 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0170 - 23268714-23268950,23269040-23269303,23269379-232694...    29   4.5  
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178...    29   5.9  
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185...    28   7.8  
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    28   7.8  
01_01_1076 - 8474869-8474934,8475028-8475128,8475248-8475405,847...    28   7.8  

>04_04_0170 -
           23268714-23268950,23269040-23269303,23269379-23269494,
           23269574-23269792,23269961-23270080,23270170-23270283,
           23271870-23271946,23272527-23272657
          Length = 425

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 254 VRGEYGYIDPS-GHRHAIKYIADVNGF 279
           VRG +GY+DP   H H +    DV  F
Sbjct: 293 VRGTFGYVDPEYRHNHKVNAAGDVYSF 319


>12_01_0237 +
           1782593-1782778,1784942-1784996,1785086-1787028,
           1787103-1787261,1787432-1787603,1787705-1788003,
           1788278-1788583
          Length = 1039

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 101 IGDEQKDMTMNVPFLFVLVVCIVQSLTEGQPLDGAHGNDIIYNEFVNENIDK-GEY--SY 157
           + D  +DMT+ +  +  L+   V   TEG P     G  II + F+   +    +Y  S 
Sbjct: 167 VWDALQDMTLIILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVSDYKQSL 226

Query: 158 RFKTIDETEKDETAYFNEDGDLVVVGYYSYV 188
           +FK +D  +K    +   DG    +  Y  V
Sbjct: 227 QFKELDNEKKKIFIHVTRDGRRQKISIYDLV 257


>11_01_0240 +
           1852186-1852371,1854183-1854237,1854391-1856267,
           1856342-1856500,1856692-1856863,1856965-1857263,
           1857539-1857844
          Length = 1017

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 3/91 (3%)

Query: 101 IGDEQKDMTMNVPFLFVLVVCIVQSLTEGQPLDGAHGNDIIYNEFVNENIDK-GEY--SY 157
           + D  +DMT+ +  +  L+   V   TEG P     G  II + F+   +    +Y  S 
Sbjct: 145 VWDAFQDMTLIILMVCALLSVAVGLATEGWPKGMYDGLGIILSIFLVVMVTAVSDYKQSL 204

Query: 158 RFKTIDETEKDETAYFNEDGDLVVVGYYSYV 188
           +FK +D  +K    +   DG    +  Y  V
Sbjct: 205 QFKELDNEKKKIFIHVTRDGRRQKISIYDLV 235


>03_05_0967 +
           29265465-29266214,29267718-29267944,29268428-29268557,
           29268651-29268719,29268803-29268946,29269775-29270011,
           29270897-29270998,29271131-29271396,29271766-29273410,
           29274449-29275018
          Length = 1379

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 197 VPYRADKTGFHIEKISSGSFNLPNAIVASLLGGYETSEGSFR 238
           + Y     GFH +  S   +  P A + + LGG  T+ G FR
Sbjct: 232 IGYSGGGQGFHPQHHSMFKYVRPGATLGAPLGGAPTATGQFR 273


>01_01_1076 -
           8474869-8474934,8475028-8475128,8475248-8475405,
           8475554-8475628,8476528-8476667,8477284-8477377,
           8478063-8478271
          Length = 280

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 138 NDIIYNEFVNENIDKG--EYSYRFKTIDETEKDETAYFNEDGDLV 180
           N+I++NE V E  D+G  E  ++   ++E  KD     ++ G ++
Sbjct: 181 NEIVFNEAVIEERDQGIQEIQHQITEVNEIFKDLAVLVHDQGQMI 225


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.139    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,564,425
Number of Sequences: 37544
Number of extensions: 367388
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 5
length of query: 296
length of database: 14,793,348
effective HSP length: 82
effective length of query: 214
effective length of database: 11,714,740
effective search space: 2506954360
effective search space used: 2506954360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)