GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000339-TA|BGIBMGA000339-PA|IPR000618|Insect cuticle
protein
         (296 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.64 
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_21592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  

>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 150 IDKGEYSYRFKTIDETEKDETAYFNEDGDLVVVGYYSYVDPEGKIHY 196
           ID  EY   + TID  E D   Y   DG    +GYY+   PE  I Y
Sbjct: 397 IDGPEYDIGYHTIDGPEYD-IGYHTIDGPEYDIGYYTIDGPEYDIGY 442



 Score = 31.9 bits (69), Expect = 0.64
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 150 IDKGEYSYRFKTIDETEKDETAYFNEDGDLVVVGYYSYVDPEGKIHYV 197
           ID  EY   + TID  E D   Y   DG    +GY++   PE  I Y+
Sbjct: 421 IDGPEYDIGYYTIDGPEYD-IGYHTIDGPEYDIGYHTIDGPEDNIGYI 467


>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1189

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 137 GNDIIYNEFVNENIDKGEYSYRFKTIDETEKDETA--YFNEDGDLVV 181
           G D +   F+ E+ +KGE S R K ++E    + A  +  E  D+VV
Sbjct: 49  GGDQLKKAFLAESGEKGEISLRGKYVNEITSSQLAPFFLEEPSDIVV 95


>SB_21592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 98  GYKIGDEQKDMTMNVPFLFVLVVCIVQSLTEGQPLDGAHGNDIIYNEFVNENIDKGEYSY 157
           G  +  EQ  +     FLF++ +C  +S T G  +    G   IYN    ++I     S+
Sbjct: 19  GLFVAYEQLKVFHIAQFLFIVRLC-PRSATRGNLIGYTTGGLPIYNFQTPQSILSTFRSF 77

Query: 158 RFKTIDETEKDETAYF 173
             +T++E+E  +  YF
Sbjct: 78  MRQTLEESESRQIFYF 93


>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 115 LFVLVVCIVQSLTEGQPLDGAHGNDIIYNEFVNENIDKGEYSYRFKTIDETEKDETAYFN 174
           LFV  + + + +T   P  G H N I  N  ++ N     + +   T+   + DE  +FN
Sbjct: 334 LFVFQLMLKRKITLEPPYIGCHSNKICQNVEIHANKVLANFGF-ISTLCPRDIDENLFFN 392


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.139    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,169,007
Number of Sequences: 59808
Number of extensions: 440495
Number of successful extensions: 800
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 797
Number of HSP's gapped (non-prelim): 6
length of query: 296
length of database: 16,821,457
effective HSP length: 82
effective length of query: 214
effective length of database: 11,917,201
effective search space: 2550281014
effective search space used: 2550281014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)